# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	18.57		
1udhA	244	24.28	c.18.1.1	31015
2otnA	308	29.47		
3cxmA	268	39.63		
2jhqA	226	42.63		
1z6jT	211	48.59	b.1.2.1,b.1.2.1	124527,124528
1f5aA	513	52.92	d.58.16.1,a.160.1.1,d.218.1.3	39337,75835,75836
2baa	243	57.16		
1ujrA	110	58.99	d.289.1.1	113258
2yufA	142	61.39		
1w78A	422	61.75		
1zyoA	191	66.87		
4eugA	229	72.06	c.18.1.1	31019
1b8iB	63	78.68	a.4.1.1	16011
1cqmA	101	79.45	d.58.14.1	39321
2booA	247	81.04		
1jmtB	28	85.38		
1pufB	73	85.90	a.4.1.1	95132
1yrnB	83	86.94	a.4.1.1	15986
1d2nA	272	88.39	c.37.1.20	32428
2j5aA	110	89.19		
1v1pA	211	89.44	b.40.2.2,d.15.6.1	108268,108269