# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2if6A	186	19.46		
1o59A	355	26.08	b.18.1.22,b.18.1.22	92495,92496
2rldA	121	29.10		
1qo0D	196	33.00	c.23.1.3	31125
2yufA	142	38.53		
1mpgA	282	43.73	a.96.1.3,d.129.1.2	18747,41296
1f1uA	323	46.74	d.32.1.3,d.32.1.3	83200,83201
1psuA	140	47.79	d.38.1.5	88285
1pufB	73	58.95	a.4.1.1	95132
2gtdA	251	61.37	c.55.1.13,c.55.1.13	135634,135635
1udhA	244	66.15	c.18.1.1	31015
1vmbA	140	71.63	d.58.14.1	113672
1yrnB	83	79.40	a.4.1.1	15986
2j5aA	110	79.54		
1b72B	87	79.55	a.4.1.1	16001
2otnA	308	83.19		
1cqmA	101	85.40	d.58.14.1	39321