# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hk9A	74	4.072	b.38.1.2	83541
3c19A	186	13.56		
1u1sA	82	14.59	b.38.1.2	119451
2cpmA	94	17.47		
1kq1A	77	19.70	b.38.1.2	72848
1a8lA	226	19.70	c.47.1.2,c.47.1.2	32777,32778
1x8dA	104	19.81		
1gwiA	411	25.45	a.104.1.1	76364
1ln4A	104	26.29	d.68.4.1	74043
1vmbA	140	30.78	d.58.14.1	113672
1cqmA	101	34.28	d.58.14.1	39321
1chdA	203	35.06	c.40.1.1	32478
2elcA	329	35.63		
1hyvA	166	36.05	c.55.3.2	61424
2q7aA	152	37.25		
2gdtA	116	38.01		
1chd	203	42.99		
2h88B	252	45.28		
1a8l	226	46.52		
1louA	101	49.39	d.58.14.1	39323
1g63A	181	49.81	c.34.1.1	60299
1zuoA	186	50.11	d.20.1.1	125680
2r76A	152	50.35		
1zruA	264	53.94	b.21.1.3,b.108.1.4,b.163.1.2	125560,125561,125562
1o0iA	138	54.69	d.38.1.5	86532
2b4rO	345	57.79	c.2.1.3,d.81.1.1	127845,127846
2culA	232	58.23	c.3.1.7	130813
1iuhA	198	58.48	d.61.1.2	83711
1hyuA	521	59.28	c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2	30547,30548,32779,32780
1c8nA	276	66.98	b.121.4.7	23308
1prtF	98	67.96	b.40.2.1	25140
2esrA	177	68.84	c.66.1.46	132344
1jipA	403	75.16	a.104.1.1	66748
1exqA	154	75.80	c.55.3.2	33646
2jbaA	127	76.41		
1uliA	460	76.71	b.33.1.2,d.129.3.3	107921,107922
2dytA	312	76.79		
2bsdA	264	77.37	b.21.1.3,b.108.1.4,b.163.1.2	129081,129082,129083
2cy9A	140	77.79	d.38.1.5	131019
2eisA	133	78.46		
2i6gA	199	80.03	c.66.1.44	137096
2ywmA	229	81.19		
2djkA	133	82.12	c.47.1.2	131548
1wznA	252	83.94	c.66.1.43	121525
2dnrA	91	85.93		
1l0bA	229	87.04	c.15.1.3,c.15.1.3	73391,73392