PFRMAT RR TARGET T0487 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa7str2_7near3nsep5.47.data03.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 25 MODEL 1 RPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLV LEGTLARMGQTYAYRLYPKGRRPL 28 37 0 8 0.558736 28 38 0 8 0.489273 28 39 0 8 0.481936 28 40 0 8 0.470575 28 41 0 8 0.537357 28 42 0 8 0.614959 28 43 0 8 0.564426 28 45 0 8 0.598457 28 46 0 8 0.57204 28 47 0 8 0.508318 28 49 0 8 0.56234 28 50 0 8 0.491548 28 52 0 8 0.487909 28 55 0 8 0.4668 28 56 0 8 0.623381 28 57 0 8 0.666842 28 58 0 8 0.772968 28 59 0 8 0.772625 28 60 0 8 0.753411 28 61 0 8 0.640813 28 62 0 8 0.500758 28 64 0 8 0.480835 28 66 0 8 0.496856 28 67 0 8 0.575887 28 68 0 8 0.514448 28 69 0 8 0.513175 28 70 0 8 0.473293 28 71 0 8 0.47103 28 72 0 8 0.594836 28 73 0 8 0.639626 28 74 0 8 0.653872 28 75 0 8 0.704951 28 76 0 8 0.624476 28 77 0 8 0.558063 28 88 0 8 0.566654 28 89 0 8 0.568544 28 90 0 8 0.633811 28 91 0 8 0.603264 28 92 0 8 0.484814 29 39 0 8 0.482913 29 40 0 8 0.475003 29 41 0 8 0.596479 29 42 0 8 0.796293 29 43 0 8 0.747597 29 44 0 8 0.510286 29 45 0 8 0.816916 29 46 0 8 0.81054 29 47 0 8 0.716094 29 48 0 8 0.553505 29 49 0 8 0.781851 29 50 0 8 0.703754 29 51 0 8 0.567076 29 52 0 8 0.615831 29 53 0 8 0.568 29 55 0 8 0.545844 29 56 0 8 0.784685 29 57 0 8 0.78635 29 58 0 8 0.89309 29 59 0 8 0.793717 29 60 0 8 0.805163 29 61 0 8 0.591369 29 64 0 8 0.533227 29 65 0 8 0.487397 29 66 0 8 0.477991 29 67 0 8 0.624969 29 68 0 8 0.473287 29 69 0 8 0.506431 29 70 0 8 0.531438 29 71 0 8 0.536641 29 72 0 8 0.741455 29 73 0 8 0.789445 29 74 0 8 0.781281 29 75 0 8 0.821533 29 76 0 8 0.602297 29 77 0 8 0.516872 29 79 0 8 0.585725 29 82 0 8 0.543724 29 86 0 8 0.631401 29 87 0 8 0.580205 29 88 0 8 0.728261 29 89 0 8 0.6264 29 90 0 8 0.697843 29 91 0 8 0.602271 30 41 0 8 0.515911 30 42 0 8 0.610179 30 43 0 8 0.554708 30 45 0 8 0.573115 30 46 0 8 0.529445 30 47 0 8 0.463579 30 49 0 8 0.555007 30 55 0 8 0.482343 30 56 0 8 0.667815 30 57 0 8 0.739436 30 58 0 8 0.806614 30 59 0 8 0.767115 30 60 0 8 0.731128 30 61 0 8 0.561987 30 67 0 8 0.537207 30 69 0 8 0.470793 30 70 0 8 0.503863 30 71 0 8 0.533891 30 72 0 8 0.665832 30 73 0 8 0.704845 30 74 0 8 0.689196 30 75 0 8 0.701385 30 76 0 8 0.567877 30 86 0 8 0.48902 30 87 0 8 0.479249 30 88 0 8 0.598312 30 89 0 8 0.543385 30 90 0 8 0.581752 30 91 0 8 0.515203 31 40 0 8 0.503237 31 41 0 8 0.638064 31 42 0 8 0.822202 31 43 0 8 0.755412 31 45 0 8 0.807047 31 46 0 8 0.798713 31 47 0 8 0.661399 31 49 0 8 0.765016 31 50 0 8 0.647444 31 52 0 8 0.528493 31 53 0 8 0.522398 31 55 0 8 0.511441 31 56 0 8 0.789913 31 57 0 8 0.835672 31 58 0 8 0.893505 31 59 0 8 0.75339 31 60 0 8 0.745588 31 64 0 8 0.5613 31 65 0 8 0.511781 31 66 0 8 0.495997 31 67 0 8 0.636401 31 69 0 8 0.525257 31 70 0 8 0.624148 31 71 0 8 0.648206 31 72 0 8 0.825721 31 73 0 8 0.853005 31 74 0 8 0.81639 31 75 0 8 0.806509 31 76 0 8 0.51539 31 79 0 8 0.583596 31 82 0 8 0.511921 31 85 0 8 0.49588 31 86 0 8 0.715514 31 87 0 8 0.662066 31 88 0 8 0.764084 31 89 0 8 0.610723 31 90 0 8 0.641555 31 91 0 8 0.484394 32 41 0 8 0.702971 32 42 0 8 0.852576 32 43 0 8 0.770591 32 44 0 8 0.474387 32 45 0 8 0.807512 32 46 0 8 0.816801 32 47 0 8 0.645294 32 49 0 8 0.74917 32 50 0 8 0.626507 32 52 0 8 0.497353 32 53 0 8 0.504061 32 55 0 8 0.515366 32 56 0 8 0.78591 32 57 0 8 0.831031 32 58 0 8 0.879968 32 59 0 8 0.753077 32 60 0 8 0.732107 32 64 0 8 0.599079 32 65 0 8 0.546467 32 66 0 8 0.53428 32 67 0 8 0.651533 32 68 0 8 0.477325 32 69 0 8 0.551632 32 70 0 8 0.657268 32 71 0 8 0.697577 32 72 0 8 0.838685 32 73 0 8 0.857068 32 74 0 8 0.80911 32 75 0 8 0.791753 32 76 0 8 0.504806 32 79 0 8 0.569541 32 82 0 8 0.472293 32 85 0 8 0.486976 32 86 0 8 0.703168 32 87 0 8 0.667467 32 88 0 8 0.739767 32 89 0 8 0.584408 32 90 0 8 0.604118 33 42 0 8 0.894717 33 43 0 8 0.827056 33 44 0 8 0.567763 33 45 0 8 0.861033 33 46 0 8 0.852154 33 47 0 8 0.715969 33 48 0 8 0.506042 33 49 0 8 0.781495 33 50 0 8 0.661789 33 51 0 8 0.463431 33 52 0 8 0.562515 33 53 0 8 0.5892 33 55 0 8 0.556335 33 56 0 8 0.782781 33 57 0 8 0.790521 33 58 0 8 0.847278 33 59 0 8 0.721057 33 60 0 8 0.732893 33 61 0 8 0.482458 33 63 0 8 0.479882 33 64 0 8 0.660304 33 65 0 8 0.608479 33 66 0 8 0.587195 33 67 0 8 0.691914 33 68 0 8 0.518691 33 69 0 8 0.593629 33 70 0 8 0.68526 33 71 0 8 0.718052 33 72 0 8 0.823949 33 73 0 8 0.825714 33 74 0 8 0.774016 33 75 0 8 0.773821 33 76 0 8 0.51316 33 79 0 8 0.612822 33 82 0 8 0.561356 33 85 0 8 0.521794 33 86 0 8 0.708285 33 87 0 8 0.671456 33 88 0 8 0.727803 33 89 0 8 0.56347 33 90 0 8 0.581156 34 43 0 8 0.635158 34 45 0 8 0.611743 34 46 0 8 0.526207 34 56 0 8 0.581934 34 57 0 8 0.593462 34 58 0 8 0.595645 34 59 0 8 0.582435 34 60 0 8 0.558002 34 64 0 8 0.527586 34 65 0 8 0.505374 34 66 0 8 0.515105 34 67 0 8 0.560583 34 69 0 8 0.50407 34 70 0 8 0.585203 34 71 0 8 0.621906 34 72 0 8 0.65554 34 73 0 8 0.612001 34 74 0 8 0.53252 34 75 0 8 0.507419 34 86 0 8 0.468563 34 87 0 8 0.470143 34 88 0 8 0.485054 35 45 0 8 0.582331 35 46 0 8 0.489561 35 56 0 8 0.533693 35 57 0 8 0.527504 35 58 0 8 0.550848 35 59 0 8 0.526638 35 60 0 8 0.518305 35 64 0 8 0.515897 35 65 0 8 0.491508 35 66 0 8 0.508396 35 67 0 8 0.550804 35 69 0 8 0.48761 35 70 0 8 0.539897 35 71 0 8 0.562321 35 72 0 8 0.602908 35 73 0 8 0.561422 35 74 0 8 0.492581 35 75 0 8 0.462786 35 88 0 8 0.47716 36 45 0 8 0.501012 40 60 0 8 0.500869 41 60 0 8 0.516475 42 58 0 8 0.634572 42 59 0 8 0.517527 42 60 0 8 0.634129 42 64 0 8 0.552753 42 65 0 8 0.47337 42 66 0 8 0.46885 42 67 0 8 0.563153 42 72 0 8 0.537502 42 73 0 8 0.539436 42 74 0 8 0.537043 42 75 0 8 0.599863 42 79 0 8 0.533726 42 86 0 8 0.484566 42 88 0 8 0.503491 42 90 0 8 0.481466 43 52 0 8 0.467273 43 53 0 8 0.490883 43 56 0 8 0.525819 43 57 0 8 0.481447 43 58 0 8 0.684373 43 59 0 8 0.530001 43 60 0 8 0.657389 43 64 0 8 0.574239 43 65 0 8 0.498044 43 66 0 8 0.493521 43 67 0 8 0.596631 43 70 0 8 0.469241 43 72 0 8 0.559844 43 73 0 8 0.545033 43 74 0 8 0.548568 43 75 0 8 0.607959 43 79 0 8 0.55759 43 82 0 8 0.534094 43 86 0 8 0.522329 43 88 0 8 0.536876 43 90 0 8 0.487115 44 60 0 8 0.484102 45 56 0 8 0.504384 45 58 0 8 0.656382 45 60 0 8 0.59711 45 64 0 8 0.50724 45 67 0 8 0.534491 45 72 0 8 0.558643 45 73 0 8 0.531506 45 74 0 8 0.524771 45 75 0 8 0.574544 45 79 0 8 0.519944 45 82 0 8 0.477326 45 86 0 8 0.519206 45 88 0 8 0.528358 45 90 0 8 0.465351 46 56 0 8 0.671824 46 57 0 8 0.555752 46 58 0 8 0.790571 46 59 0 8 0.550568 46 60 0 8 0.706937 46 64 0 8 0.631479 46 65 0 8 0.501508 46 66 0 8 0.46367 46 67 0 8 0.644757 46 70 0 8 0.500012 46 72 0 8 0.69861 46 73 0 8 0.670992 46 74 0 8 0.65153 46 75 0 8 0.713008 46 79 0 8 0.654437 46 82 0 8 0.580676 46 86 0 8 0.634688 46 87 0 8 0.524241 46 88 0 8 0.633613 46 90 0 8 0.561537 47 56 0 8 0.710791 47 57 0 8 0.57667 47 58 0 8 0.789521 47 59 0 8 0.536361 47 60 0 8 0.708656 47 64 0 8 0.620023 47 65 0 8 0.502098 47 66 0 8 0.479122 47 67 0 8 0.674446 47 69 0 8 0.505234 47 70 0 8 0.560704 47 72 0 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0 8 0.639134 79 92 0 8 0.490743 79 95 0 8 0.514499 80 89 0 8 0.648539 80 90 0 8 0.704548 80 91 0 8 0.595443 80 92 0 8 0.502495 80 95 0 8 0.512348 81 90 0 8 0.604481 81 91 0 8 0.512153 82 91 0 8 0.562119 83 92 0 8 0.50146 85 95 0 8 0.488364 86 95 0 8 0.565426 END