PFRMAT RR TARGET T0487 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplccrr.th62.17.730_47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 25 MODEL 1 RPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLV LEGTLARMGQTYAYRLYPKGRRPL 52 61 0 8 0.0187143 52 62 0 8 0.0181146 52 63 0 8 0.02257 52 64 0 8 0.0430735 52 65 0 8 0.0670971 52 66 0 8 0.0636013 52 67 0 8 0.0682516 52 69 0 8 0.0408468 52 70 0 8 0.0520197 52 71 0 8 0.0523807 52 73 0 8 0.0431592 52 74 0 8 0.0378241 52 76 0 8 0.0277415 52 79 0 8 0.0448725 52 80 0 8 0.0375891 52 81 0 8 0.032884 52 82 0 8 0.0524765 52 83 0 8 0.0442436 52 84 0 8 0.0350078 52 85 0 8 0.0557713 52 86 0 8 0.0786966 52 88 0 8 0.0595364 52 90 0 8 0.0520865 52 91 0 8 0.047492 52 92 0 8 0.0363433 52 93 0 8 0.0323248 52 94 0 8 0.0504229 52 95 0 8 0.0500789 52 96 0 8 0.0775082 53 63 0 8 0.0396039 53 64 0 8 0.0563557 53 65 0 8 0.0837315 53 66 0 8 0.0787342 53 67 0 8 0.0914348 53 68 0 8 0.0664686 53 69 0 8 0.0500544 53 70 0 8 0.0549831 53 71 0 8 0.0639127 53 72 0 8 0.0790014 53 73 0 8 0.0673072 53 74 0 8 0.060066 53 75 0 8 0.0494996 53 76 0 8 0.0384188 53 77 0 8 0.0420977 53 79 0 8 0.0503564 53 80 0 8 0.0427943 53 81 0 8 0.0354485 53 82 0 8 0.0606782 53 83 0 8 0.0492586 53 84 0 8 0.04128 53 85 0 8 0.0627638 53 88 0 8 0.0621773 53 89 0 8 0.0492971 53 90 0 8 0.0634949 53 91 0 8 0.0552342 53 92 0 8 0.0363731 53 93 0 8 0.0333165 53 94 0 8 0.050537 53 95 0 8 0.0517691 53 96 0 8 0.0677242 54 65 0 8 0.0881908 54 66 0 8 0.122497 54 67 0 8 0.136605 54 69 0 8 0.0802053 54 70 0 8 0.0609325 54 71 0 8 0.0596304 54 73 0 8 0.0691208 54 79 0 8 0.0514221 54 80 0 8 0.0453905 54 81 0 8 0.0421697 54 82 0 8 0.0520736 54 83 0 8 0.0606538 54 84 0 8 0.0496301 54 85 0 8 0.0662575 54 91 0 8 0.105646 54 93 0 8 0.0502325 54 94 0 8 0.0713784 54 95 0 8 0.0774793 54 96 0 8 0.0894376 55 64 0 8 0.0778795 55 65 0 8 0.113206 55 66 0 8 0.153481 55 67 0 8 0.152746 55 69 0 8 0.105327 55 70 0 8 0.0814683 55 71 0 8 0.0830508 55 73 0 8 0.118599 55 74 0 8 0.17599 55 76 0 8 0.115898 55 77 0 8 0.112449 55 79 0 8 0.0816487 55 80 0 8 0.0672353 55 81 0 8 0.0568086 55 82 0 8 0.0721837 55 83 0 8 0.0781069 55 84 0 8 0.0812036 55 88 0 8 0.105483 55 89 0 8 0.115343 55 90 0 8 0.163481 55 91 0 8 0.1437 55 93 0 8 0.0562783 55 94 0 8 0.0786111 55 95 0 8 0.0919019 55 96 0 8 0.0954672 56 65 0 8 0.245375 56 66 0 8 0.237132 56 67 0 8 0.399656 56 68 0 8 0.3138 56 69 0 8 0.251184 56 70 0 8 0.234906 56 71 0 8 0.178035 56 73 0 8 0.3678 56 74 0 8 0.452475 56 76 0 8 0.194935 56 77 0 8 0.151004 56 79 0 8 0.189231 56 80 0 8 0.11313 56 81 0 8 0.0724368 56 82 0 8 0.123769 56 83 0 8 0.0867651 56 84 0 8 0.103519 56 88 0 8 0.223821 56 89 0 8 0.192942 56 90 0 8 0.358944 56 91 0 8 0.233188 56 92 0 8 0.0871986 56 93 0 8 0.0568661 56 94 0 8 0.0810892 56 95 0 8 0.0939441 56 96 0 8 0.087332 57 66 0 8 0.184843 57 67 0 8 0.225661 57 68 0 8 0.162991 57 69 0 8 0.142456 57 70 0 8 0.145508 57 71 0 8 0.15085 57 72 0 8 0.296936 57 73 0 8 0.27995 57 74 0 8 0.242531 57 75 0 8 0.229208 57 76 0 8 0.163246 57 77 0 8 0.102913 57 79 0 8 0.0998629 57 80 0 8 0.0601554 57 81 0 8 0.0434418 57 82 0 8 0.0570916 57 83 0 8 0.0599719 57 84 0 8 0.0694466 57 85 0 8 0.105894 57 87 0 8 0.135969 57 88 0 8 0.151284 57 89 0 8 0.126517 57 90 0 8 0.17538 57 91 0 8 0.116291 57 92 0 8 0.0527447 57 93 0 8 0.043028 57 94 0 8 0.0488323 57 95 0 8 0.0559276 57 96 0 8 0.0707726 58 67 0 8 0.229056 58 69 0 8 0.121878 58 70 0 8 0.155056 58 80 0 8 0.0712971 58 81 0 8 0.041725 58 82 0 8 0.0752222 58 83 0 8 0.0555343 58 84 0 8 0.0630675 58 88 0 8 0.178221 58 89 0 8 0.10434 58 90 0 8 0.192808 58 91 0 8 0.116884 58 93 0 8 0.0391168 58 94 0 8 0.0446015 58 95 0 8 0.0459251 58 96 0 8 0.058369 59 69 0 8 0.104237 59 70 0 8 0.158506 59 80 0 8 0.0657038 59 81 0 8 0.0481349 59 82 0 8 0.0762252 59 83 0 8 0.0775849 59 84 0 8 0.0734247 59 88 0 8 0.151205 59 89 0 8 0.0991186 59 90 0 8 0.0865795 59 91 0 8 0.0772724 59 93 0 8 0.0447474 59 94 0 8 0.059665 59 95 0 8 0.0609449 59 96 0 8 0.0811695 60 69 0 8 0.122634 64 84 0 8 0.0585859 65 84 0 8 0.0498585 66 82 0 8 0.0610869 66 83 0 8 0.0725372 66 84 0 8 0.0391569 66 88 0 8 0.0820538 66 89 0 8 0.0641144 66 90 0 8 0.0885118 66 91 0 8 0.0612066 66 96 0 8 0.107275 67 76 0 8 0.0605213 67 77 0 8 0.0601249 67 80 0 8 0.0828506 67 81 0 8 0.0531668 67 82 0 8 0.0911664 67 83 0 8 0.0925783 67 84 0 8 0.0701705 67 88 0 8 0.135748 67 89 0 8 0.128072 67 90 0 8 0.147794 67 91 0 8 0.119931 67 94 0 8 0.117322 67 96 0 8 0.166399 68 84 0 8 0.0536218 69 80 0 8 0.0590075 69 82 0 8 0.0695831 69 84 0 8 0.0562255 69 88 0 8 0.120758 69 91 0 8 0.107214 69 96 0 8 0.153842 70 80 0 8 0.0694816 70 81 0 8 0.0585133 70 82 0 8 0.0856858 70 83 0 8 0.11958 70 84 0 8 0.11652 70 88 0 8 0.176117 70 89 0 8 0.0865718 70 90 0 8 0.129818 70 91 0 8 0.125025 70 94 0 8 0.0834189 70 96 0 8 0.111609 71 80 0 8 0.056106 71 81 0 8 0.0535511 71 82 0 8 0.0593292 71 83 0 8 0.0719231 71 84 0 8 0.0781945 71 88 0 8 0.0924347 71 89 0 8 0.118726 71 90 0 8 0.166414 71 91 0 8 0.140062 71 93 0 8 0.0670837 71 94 0 8 0.0852582 71 96 0 8 0.117136 72 82 0 8 0.155802 72 84 0 8 0.117177 73 82 0 8 0.147565 73 83 0 8 0.0852046 73 84 0 8 0.101957 73 88 0 8 0.277638 73 91 0 8 0.192208 73 94 0 8 0.0643428 73 96 0 8 0.0957444 74 83 0 8 0.111202 74 84 0 8 0.109794 74 88 0 8 0.32364 74 89 0 8 0.191645 74 90 0 8 0.357551 74 91 0 8 0.182091 74 93 0 8 0.0453902 74 94 0 8 0.0654815 74 95 0 8 0.0714548 74 96 0 8 0.0869141 75 84 0 8 0.143014 75 88 0 8 0.331959 75 91 0 8 0.187484 75 93 0 8 0.0554575 75 94 0 8 0.0869571 75 95 0 8 0.0892321 75 96 0 8 0.103528 76 91 0 8 0.143601 78 91 0 8 0.0528239 78 93 0 8 0.029173 79 91 0 8 0.0854071 79 92 0 8 0.0458463 79 93 0 8 0.0339054 80 89 0 8 0.0422863 80 90 0 8 0.106366 80 91 0 8 0.043865 80 92 0 8 0.0292676 80 93 0 8 0.0210468 80 94 0 8 0.0495629 80 95 0 8 0.0357994 80 96 0 8 0.0859395 81 90 0 8 0.0514943 81 91 0 8 0.0294916 81 92 0 8 0.0244797 81 93 0 8 0.0184194 81 94 0 8 0.0335123 81 95 0 8 0.0276521 81 96 0 8 0.0700967 82 91 0 8 0.0512855 82 92 0 8 0.0377436 82 93 0 8 0.0280463 82 94 0 8 0.0601 82 95 0 8 0.0461283 82 96 0 8 0.0945918 83 92 0 8 0.0508193 83 93 0 8 0.0300108 83 94 0 8 0.056271 83 95 0 8 0.0416842 83 96 0 8 0.0917916 84 93 0 8 0.0179869 84 94 0 8 0.024223 84 95 0 8 0.0258253 84 96 0 8 0.0582239 85 94 0 8 0.042637 85 95 0 8 0.0360466 85 96 0 8 0.0847401 86 95 0 8 0.105243 86 96 0 8 0.140776 87 96 0 8 0.128564 END