PFRMAT RR TARGET T0487 AUTHOR 4008-1775-0004 REMARK From group SAM-TO6 under the direction of REMARK Kevin Karplus. REMARK Residue-residue contact predictions REMARK by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network. METHOD NN: con.aa5str2_5near5nsep5.entmi_epplcc.th62.47.net METHOD Inputs may include separation and sequence length, METHOD e-value statistic based on mutual information values, METHOD a statistic based on propensity of residues in contact. METHOD Other inputs are distributions from alignments and METHOD secondary predictions from SAM-t04 and/or SAM-t06 of METHOD the University of California, Santa Cruz REMARK REMARK Starting column is 25 MODEL 1 RPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLV LEGTLARMGQTYAYRLYPKGRRPL 27 36 0 8 0.688989 27 41 0 8 0.698932 27 42 0 8 0.82496 27 43 0 8 0.744625 27 45 0 8 0.750723 27 46 0 8 0.738937 27 47 0 8 0.624181 27 49 0 8 0.657409 27 58 0 8 0.753559 27 59 0 8 0.761133 27 60 0 8 0.818617 27 61 0 8 0.644055 27 64 0 8 0.679751 27 65 0 8 0.613496 27 67 0 8 0.711397 27 72 0 8 0.624792 27 73 0 8 0.680811 27 74 0 8 0.743539 27 75 0 8 0.771558 27 76 0 8 0.625438 27 79 0 8 0.659589 27 86 0 8 0.605742 27 88 0 8 0.639942 27 90 0 8 0.709788 27 91 0 8 0.631781 28 41 0 8 0.664918 28 42 0 8 0.8118 28 43 0 8 0.715518 28 45 0 8 0.726426 28 46 0 8 0.704548 28 58 0 8 0.736593 28 59 0 8 0.758047 28 60 0 8 0.809182 28 61 0 8 0.618219 28 64 0 8 0.631012 28 67 0 8 0.674431 28 73 0 8 0.647717 28 74 0 8 0.721337 28 75 0 8 0.755138 28 90 0 8 0.681721 29 39 0 8 0.620709 29 40 0 8 0.609402 29 41 0 8 0.774103 29 42 0 8 0.873942 29 43 0 8 0.80448 29 44 0 8 0.607594 29 45 0 8 0.780378 29 46 0 8 0.788293 29 47 0 8 0.666251 29 49 0 8 0.697817 29 50 0 8 0.650726 29 56 0 8 0.711463 29 57 0 8 0.696474 29 58 0 8 0.847822 29 60 0 8 0.85499 29 64 0 8 0.724148 29 65 0 8 0.655898 29 67 0 8 0.739808 29 72 0 8 0.731589 29 73 0 8 0.790697 29 74 0 8 0.834286 29 75 0 8 0.846412 29 79 0 8 0.702778 29 86 0 8 0.68629 29 87 0 8 0.683835 29 88 0 8 0.713818 29 90 0 8 0.759091 29 91 0 8 0.655975 31 42 0 8 0.879325 31 43 0 8 0.809358 31 45 0 8 0.786075 31 46 0 8 0.801303 31 47 0 8 0.648514 31 49 0 8 0.698942 31 50 0 8 0.641684 31 56 0 8 0.720247 31 57 0 8 0.723548 31 58 0 8 0.845329 31 60 0 8 0.834135 31 61 0 8 0.607068 31 64 0 8 0.709896 31 65 0 8 0.652627 31 67 0 8 0.705666 31 70 0 8 0.619653 31 72 0 8 0.76289 31 73 0 8 0.821244 31 74 0 8 0.848014 31 75 0 8 0.849739 31 79 0 8 0.717023 31 86 0 8 0.718757 31 87 0 8 0.722853 31 88 0 8 0.734507 31 90 0 8 0.736439 32 42 0 8 0.879271 32 43 0 8 0.822909 32 44 0 8 0.642311 32 45 0 8 0.790381 32 46 0 8 0.804726 32 47 0 8 0.655934 32 49 0 8 0.683615 32 50 0 8 0.637653 32 56 0 8 0.723962 32 57 0 8 0.722296 32 58 0 8 0.848996 32 59 0 8 0.843301 32 60 0 8 0.839922 32 61 0 8 0.631845 32 64 0 8 0.712146 32 65 0 8 0.660688 32 67 0 8 0.698801 32 70 0 8 0.645108 32 72 0 8 0.77124 32 73 0 8 0.835446 32 74 0 8 0.861545 32 75 0 8 0.860984 32 76 0 8 0.705893 32 77 0 8 0.616795 32 78 0 8 0.62728 32 79 0 8 0.713478 32 86 0 8 0.725297 32 87 0 8 0.74673 32 88 0 8 0.750664 32 90 0 8 0.725377 33 42 0 8 0.901421 33 43 0 8 0.862352 33 45 0 8 0.838705 33 46 0 8 0.837426 33 47 0 8 0.699574 33 49 0 8 0.715246 33 50 0 8 0.665108 33 56 0 8 0.736196 33 57 0 8 0.717977 33 58 0 8 0.847198 33 60 0 8 0.858559 33 64 0 8 0.781091 33 65 0 8 0.744097 33 67 0 8 0.7625 33 72 0 8 0.790724 33 73 0 8 0.84308 33 74 0 8 0.863066 33 75 0 8 0.872873 33 78 0 8 0.717709 33 79 0 8 0.780312 33 80 0 8 0.650105 33 82 0 8 0.637252 33 86 0 8 0.761153 33 87 0 8 0.784732 33 88 0 8 0.788145 33 90 0 8 0.771974 33 91 0 8 0.672725 34 43 0 8 0.822568 34 44 0 8 0.68205 34 45 0 8 0.805075 34 46 0 8 0.768686 34 49 0 8 0.623737 34 56 0 8 0.66643 34 57 0 8 0.647419 34 58 0 8 0.812884 34 59 0 8 0.820519 34 60 0 8 0.850724 34 61 0 8 0.740332 34 62 0 8 0.653519 34 63 0 8 0.659506 34 64 0 8 0.764843 34 65 0 8 0.730737 34 66 0 8 0.682172 34 67 0 8 0.76113 34 68 0 8 0.660987 34 69 0 8 0.658677 34 70 0 8 0.700733 34 71 0 8 0.676499 34 72 0 8 0.733845 34 73 0 8 0.771459 34 74 0 8 0.807269 34 75 0 8 0.829284 34 76 0 8 0.745506 34 77 0 8 0.688958 34 78 0 8 0.70049 34 79 0 8 0.759821 34 80 0 8 0.627171 34 82 0 8 0.617799 34 86 0 8 0.724291 34 87 0 8 0.751753 34 88 0 8 0.756834 34 89 0 8 0.733336 34 90 0 8 0.761184 34 91 0 8 0.68449 35 44 0 8 0.634419 35 45 0 8 0.800988 35 46 0 8 0.770939 35 47 0 8 0.630307 35 49 0 8 0.667723 35 56 0 8 0.636894 35 58 0 8 0.757757 35 59 0 8 0.764153 35 60 0 8 0.816773 35 61 0 8 0.693735 35 62 0 8 0.623211 35 63 0 8 0.618414 35 64 0 8 0.738671 35 65 0 8 0.69838 35 66 0 8 0.654073 35 67 0 8 0.743032 35 68 0 8 0.633791 35 69 0 8 0.628469 35 70 0 8 0.649467 35 72 0 8 0.670313 35 73 0 8 0.702914 35 74 0 8 0.743939 35 75 0 8 0.76889 35 76 0 8 0.66215 35 78 0 8 0.614413 35 79 0 8 0.705682 35 86 0 8 0.649913 35 87 0 8 0.666504 35 88 0 8 0.673016 35 89 0 8 0.650681 35 90 0 8 0.713358 35 91 0 8 0.618347 36 45 0 8 0.711391 36 46 0 8 0.661111 36 58 0 8 0.611295 36 59 0 8 0.630708 36 60 0 8 0.725259 36 67 0 8 0.618095 36 74 0 8 0.660141 36 75 0 8 0.714645 36 79 0 8 0.625761 36 90 0 8 0.651597 37 46 0 8 0.626701 37 58 0 8 0.665796 37 59 0 8 0.684124 37 60 0 8 0.771625 37 64 0 8 0.690479 37 65 0 8 0.642114 37 66 0 8 0.612598 37 67 0 8 0.737068 37 68 0 8 0.611309 37 69 0 8 0.621819 37 70 0 8 0.644224 37 75 0 8 0.645853 38 60 0 8 0.670885 39 60 0 8 0.637141 40 60 0 8 0.649467 41 58 0 8 0.684084 41 59 0 8 0.624663 41 60 0 8 0.708557 41 67 0 8 0.622831 41 73 0 8 0.60715 41 74 0 8 0.645609 41 75 0 8 0.671946 41 79 0 8 0.616806 42 56 0 8 0.741514 42 57 0 8 0.702817 42 58 0 8 0.825459 42 59 0 8 0.809295 42 60 0 8 0.835525 42 61 0 8 0.685995 42 63 0 8 0.62502 42 64 0 8 0.798403 42 65 0 8 0.754517 42 66 0 8 0.696279 42 67 0 8 0.790015 42 68 0 8 0.657069 42 69 0 8 0.637506 42 70 0 8 0.672965 42 71 0 8 0.633461 42 72 0 8 0.775822 42 73 0 8 0.81166 42 74 0 8 0.818283 42 75 0 8 0.824214 42 76 0 8 0.708697 42 77 0 8 0.677519 42 78 0 8 0.703094 42 79 0 8 0.782161 42 80 0 8 0.678088 42 82 0 8 0.686354 42 86 0 8 0.744241 42 87 0 8 0.730713 42 88 0 8 0.75985 42 89 0 8 0.706486 42 90 0 8 0.765843 42 91 0 8 0.683347 43 56 0 8 0.740981 43 57 0 8 0.711843 43 58 0 8 0.822909 43 59 0 8 0.80911 43 60 0 8 0.830439 43 61 0 8 0.684692 43 63 0 8 0.632774 43 64 0 8 0.794211 43 65 0 8 0.746348 43 66 0 8 0.690953 43 67 0 8 0.781035 43 68 0 8 0.652587 43 69 0 8 0.632416 43 70 0 8 0.676676 43 71 0 8 0.639247 43 72 0 8 0.771563 43 73 0 8 0.80346 43 74 0 8 0.809977 43 75 0 8 0.811368 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0 8 0.874845 79 91 0 8 0.818896 79 96 0 8 0.730414 80 89 0 8 0.791749 80 90 0 8 0.851995 80 91 0 8 0.774588 80 96 0 8 0.683692 81 90 0 8 0.793718 81 91 0 8 0.689971 81 96 0 8 0.612772 82 91 0 8 0.720599 82 96 0 8 0.633274 85 96 0 8 0.638695 86 96 0 8 0.735513 87 96 0 8 0.759435 END