Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	1.3293e-04	1u04A/T0487-1u04A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1h6qA	2.4147e+01	1h6qA/T0487-1h6qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pt5A	3.5488e+01	2pt5A/T0487-2pt5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o09A	3.8090e+01	2o09A/T0487-2o09A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1l5aA	3.8924e+01	1l5aA/T0487-1l5aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2glfA	3.9811e+01	2glfA/T0487-2glfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dmr	4.3362e+01	1dmr/T0487-1dmr-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pmyA	5.1607e+01	1pmyA/T0487-1pmyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bqkA	5.4043e+01	1bqkA/T0487-1bqkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pn0A	5.4860e+01	1pn0A/T0487-1pn0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jmxG	5.6443e+01	1jmxG/T0487-1jmxG-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bvp1	5.8782e+01	1bvp1/T0487-1bvp1-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
5croA	5.9486e+01	5croA/T0487-5croA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1pbyC	6.0766e+01	1pbyC/T0487-1pbyC-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1orc	6.2209e+01	1orc/T0487-1orc-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2iv2X	6.5648e+01	2iv2X/T0487-2iv2X-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1kdjA	6.6247e+01	1kdjA/T0487-1kdjA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1eu1A	6.7034e+01	1eu1A/T0487-1eu1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.52.2.2 c.81.1.1
1ag6A	6.8033e+01	1ag6A/T0487-1ag6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1plcA	6.8531e+01	1plcA/T0487-1plcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001