# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.02184	b.34.14.1,c.55.3.10	107539,107540
2hjhA	354	24.28		
1drmA	131	34.97	d.110.3.2	40908
1lwyA	324	39.18	a.96.1.3,d.129.1.2	78285,78286
2e11A	266	43.54		
2j9oA	298	53.92		
1dmmA	131	59.11	d.17.4.3	38114
2r9zA	463	62.43		
1ygaA	342	72.06		
1k32A	1045	72.13	b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2	68068,68069,68070,68071
1ebdA	455	74.03	c.3.1.5,c.3.1.5,d.87.1.1	30577,30578,40210
1ew0A	130	78.07	d.110.3.2	40905
2exuA	200	82.16		
2giaA	195	83.49	d.18.1.4	135221
2qckA	167	88.31