# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.03424	b.34.14.1,c.55.3.10	107539,107540
2chuA	296	19.72	c.92.2.4	130485
1lwyA	324	30.41	a.96.1.3,d.129.1.2	78285,78286
3bw6A	144	40.12		
1cj3A	392	43.47	c.3.1.2,d.16.1.2	30347,37878
2exuA	200	46.70		
2r9zA	463	51.47		
1gprA	162	54.54	b.84.3.1	28267
2e11A	266	54.93		
1ykjA	394	55.81		
2phzA	311	57.01		
2giaA	195	57.28	d.18.1.4	135221
1gpr	162	57.86		
1fbtA	190	59.25	c.60.1.4	34004
1qhsA	178	63.06	c.37.1.3	31938
2yquA	455	63.51		
1jrmA	104	68.93	d.206.1.1	67136
1f89A	291	69.16	d.160.1.1	64988
1d0nA	729	71.58	d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1,d.109.1.1	40834,40835,40836,40837,40838,40839
1xhcA	367	71.99	c.3.1.5,c.3.1.5,d.87.1.1	115292,115293,115294
1vaoA	560	73.21	d.58.32.1,d.145.1.1	39461,41724
2awkA	228	73.25		
1ew0A	130	74.21	d.110.3.2	40905
1f3zA	161	74.93	b.84.3.1	28273
1yqzA	438	77.93		
2a8nA	144	86.44	c.97.1.2	126408