# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.01890	b.34.14.1,c.55.3.10	107539,107540
2eg4A	230	34.05		
2hjhA	354	35.94		
2giaA	195	55.68	d.18.1.4	135221
1ygaA	342	60.92		
2chuA	296	66.13	c.92.2.4	130485
3cpgA	282	73.66		
1xssA	225	75.30		
2exuA	200	78.07		
1lwyA	324	78.26	a.96.1.3,d.129.1.2	78285,78286
2a8nA	144	79.77	c.97.1.2	126408
1qcrF	103	80.38	f.27.1.1	43676
1anfA	370	80.46	c.94.1.1	35776
1hulA	108	83.28	a.26.1.2	16865
1dmmA	131	88.36	d.17.4.3	38114
1rj8A	164	88.64	b.22.1.1	97547