# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.004782	b.34.14.1,c.55.3.10	107539,107540
1xssA	225	26.98		
1ygaA	342	47.07		
2exuA	200	49.80		
2giaA	195	50.99	d.18.1.4	135221
2j9oA	298	54.80		
1qhsA	178	55.93	c.37.1.3	31938
2awkA	228	58.07		
1lwyA	324	58.78	a.96.1.3,d.129.1.2	78285,78286
2p0lA	288	62.54		
2a46A	238	63.73		
2gw3A	225	64.54		
2c9jA	223	68.38		
2hqkA	219	68.76		
2h5oA	234	74.77		
2a8nA	144	75.14	c.97.1.2	126408
2eg4A	230	75.51		
3c2bA	221	80.43		
1zgoA	223	82.05		
1qcrF	103	83.53	f.27.1.1	43676
1dmmA	131	88.85	d.17.4.3	38114
2hjhA	354	89.96