# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000478	b.34.14.1,c.55.3.10	107539,107540
2hjhA	354	30.31		
1aipC	196	40.54	a.5.2.2,d.43.1.1	58930,58931
1rj8A	164	47.74	b.22.1.1	97547
2jc5A	259	56.02		
1c2pA	576	68.85	e.8.1.4	43117
1jrmA	104	69.75	d.206.1.1	67136
1efuB	282	70.68	d.43.1.1,a.5.2.2,d.43.1.1	38677,58975,58976
1hd7A	318	75.91	d.151.1.1	41780
2oizA	361	79.33		
1o4sA	389	79.93	c.67.1.1	86620
3c9qA	205	80.61		
2exuA	200	82.78		
2o3hA	285	84.50