# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1emsA	440	3.479	d.13.1.1,d.160.1.1	37520,42086
1efpB	252	3.606	c.26.2.3	31636
2i7qA	402	6.931		
1u04A	771	7.038	b.34.14.1,c.55.3.10	107539,107540
2hxdA	204	9.886		
1sur	215	10.12		
2v7bA	529	11.62		
1nlnA	204	11.93	d.3.1.7	91962
1ur1A	378	14.21	c.1.8.3	99804
1avpA	204	20.44	d.3.1.7	37132
1efvB	255	20.73	c.26.2.3	31634
1zckA	154	23.36		
1yx1A	264	25.03	c.1.15.7	124169
1eziA	228	29.04	c.68.1.13	34512
1erzA	303	29.18	d.160.1.2	59498
1uf5A	303	29.59	d.160.1.2	107808
1zrhA	274	31.81		
1j5sA	463	32.70	c.1.9.8	71580
2osxA	481	33.16		
1b43A	340	33.28	a.60.7.1,c.120.1.2	18092,33362
1o97C	264	34.90	c.26.2.3	81232
1xyzA	347	35.48	c.1.8.3	28804
2j58A	359	37.70		
1ig0A	319	37.74	b.82.6.1,c.100.1.1	62354,62355
2yxoA	267	38.78		
2nqrA	411	39.46	b.85.6.1,b.103.1.1,c.57.1.2	138490,138491,138492
3c9qA	205	40.60		
2fp3A	316	41.53		
1owlA	484	43.07	a.99.1.1,c.28.1.1	93647,93648
1g8lA	411	47.45	b.85.6.1,b.103.1.1,c.57.1.2	60365,60366,60367
1av6A	289	47.55	c.66.1.25	34218
2qgqA	304	49.38		
2fywA	267	52.02	c.135.1.1	134408
1nmsA	249	52.22	c.17.1.1	85879
2ei9A	240	58.16		
2e7jA	371	58.76		
3c7bA	417	61.40		
3mag	307	62.10		
1pydA	556	67.12	c.31.1.3,c.36.1.5,c.36.1.9	31735,31773,31774
1r85A	379	71.56	c.1.8.3	104839
1xzoA	174	72.61	c.47.1.10	122474
2j4hA	193	72.76		
1surA	215	72.94	c.26.2.2	31620
2jheA	190	77.13		
1cp3A	277	77.54	c.17.1.1	30992
2uubD	209	81.16	d.66.1.2	139935
1w9pA	433	81.33	c.1.8.5,d.26.3.1	114412,114413
1szoA	257	82.15	c.14.1.3	106164
2vqeD	209	83.23		
1ccwB	483	86.23	c.1.19.2	29646
2qxxA	190	86.76		
1xs1A	193	87.69	b.85.4.1	115892
1nvmB	312	87.79	c.2.1.3,d.81.1.1	86251,86252
2pg3A	232	88.55