Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	2.5231e-04	1u04A/T0487-1u04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
1pbeA	8.4021e+00	1pbeA/T0487-1pbeA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.3.1.2 d.16.1.2
2r4iA	2.6139e+01	2r4iA/T0487-2r4iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2chcA	3.7227e+01	2chcA/T0487-2chcA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cu3A	3.7261e+01	3cu3A/T0487-3cu3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vixA	5.2075e+01	1vixA/T0487-1vixA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.56.5.4 d.58.19.1
1vzoA	5.3162e+01	1vzoA/T0487-1vzoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.144.1.7
2f8mA	5.3970e+01	2f8mA/T0487-2f8mA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1aipC	6.2088e+01	1aipC/T0487-1aipC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.5.2.2 d.43.1.1
2vl0A	6.3385e+01	2vl0A/T0487-2vl0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2giaA	6.3978e+01	2giaA/T0487-2giaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.18.1.4
3bl6A	6.4633e+01	3bl6A/T0487-3bl6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igrA	6.5931e+01	2igrA/T0487-2igrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zjrT	6.6369e+01	2zjrT/T0487-2zjrT-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3ladA	6.7126e+01	3ladA/T0487-3ladA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.3.1.5 c.3.1.5 d.87.1.1
1wwrA	6.8167e+01	1wwrA/T0487-1wwrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.97.1.2
1a3qA	6.9654e+01	1a3qA/T0487-1a3qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.1 b.2.5.3
2ivfA	7.3216e+01	2ivfA/T0487-2ivfA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v8qA	7.6392e+01	1v8qA/T0487-1v8qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bv0A	7.9202e+01	3bv0A/T0487-3bv0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001