# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.003509	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	2.141	c.3.1.2,d.16.1.2	30338,37869
2f8mA	244	14.21		
1vzoA	355	14.69	d.144.1.7	108971
2r4iA	123	16.43		
1xvsA	126	21.00	b.1.23.1	116095
3bl6A	230	21.65		
1vixA	420	22.97	c.56.5.4,d.58.19.1	100777,100778
2chcA	170	24.43		
1xtzA	264	29.27		
3cu3A	172	29.57		
3ladA	476	31.89	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1aipC	196	32.15	a.5.2.2,d.43.1.1	58930,58931
1tcvA	287	38.82		
1a3qA	285	39.58	b.1.18.1,b.2.5.3	21932,22447
1wwrA	171	47.60	c.97.1.2	121366
1je0A	236	51.90	c.56.2.1	66581
2qa1A	500	59.31		
1wkqA	164	61.22	c.97.1.2	109393
1fecA	490	66.64	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2q3uA	383	69.36	d.126.1.6	139809
2h4aA	325	70.87		
2r9zA	463	73.09		
2eayA	233	75.37		
2b78A	385	77.90	b.122.1.9,c.66.1.51	128025,128026
2jugA	78	78.24		
1tb3A	352	81.67	c.1.4.1	119205
1y0yA	353	82.59	b.49.3.1,c.56.5.4	122514,122515
1sz7A	200	85.49		
2a8yA	270	86.53