# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001866	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.662	c.3.1.2,d.16.1.2	30338,37869
2chcA	170	8.585		
2r4iA	123	14.18		
1vzoA	355	14.26	d.144.1.7	108971
2f8mA	244	17.54		
3cu3A	172	22.31		
3bl6A	230	25.87		
3ladA	476	29.17	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1xtzA	264	37.99		
1aipC	196	40.37	a.5.2.2,d.43.1.1	58930,58931
1vixA	420	40.56	c.56.5.4,d.58.19.1	100777,100778
2b78A	385	47.14	b.122.1.9,c.66.1.51	128025,128026
2qa1A	500	51.60		
1je0A	236	51.77	c.56.2.1	66581
2giaA	195	52.19	d.18.1.4	135221
2h4aA	325	53.25		
2rfrA	155	59.47		
1a3qA	285	60.64	b.1.18.1,b.2.5.3	21932,22447
1c96A	753	65.56	c.8.2.1,c.83.1.1	30727,35403
1xvsA	126	65.69	b.1.23.1	116095
1tcvA	287	66.28		
1rypG	244	69.39	d.153.1.4	41938
2r9zA	463	69.80		
1bcpB	199	70.09	b.40.2.1,d.169.1.2	25120,42429
3c9qA	205	71.15		
1fecA	490	75.19	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2eayA	233	75.48		
3d9rA	135	81.79		
1vdhA	249	84.92	d.58.4.10	108523