# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.01774	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.509	c.3.1.2,d.16.1.2	30338,37869
1c96A	753	5.058	c.8.2.1,c.83.1.1	30727,35403
1zin	217	8.092		
2f8mA	244	8.659		
1bif	469	10.12		
2chcA	170	10.92		
2r4iA	123	12.79		
1vzoA	355	13.37	d.144.1.7	108971
2yueA	168	15.79		
2qa1A	500	16.67		
2jugA	78	18.61		
3bl6A	230	19.96		
2qf7A	1165	25.71		
1bia	321	26.99		
1ecfA	504	27.33	c.61.1.1,d.153.1.1	34053,41820
1vqoU	66	30.35	g.39.1.6	120382
1bcpB	199	30.50	b.40.2.1,d.169.1.2	25120,42429
2d1uA	104	31.67		
2g3mA	693	33.92		
1y0yA	353	34.59	b.49.3.1,c.56.5.4	122514,122515
2eu8A	216	35.62		
1z45A	699	36.58	b.30.5.4,c.2.1.2	124427,124428
1yqzA	438	37.54		
2ckwA	515	39.49		
2mbrA	340	39.85	d.145.1.2,d.146.1.1	41749,41762
2fvgA	340	41.28	b.49.3.1,c.56.5.4	134201,134202
1xvqA	175	41.67	c.47.1.10	116094
2epgA	487	43.09		
1xtzA	264	43.90		
1twiA	434	44.27	b.49.2.3,c.1.6.1	107399,107400
1kcqA	104	45.46	d.109.1.1	68449
2a8nA	144	46.81	c.97.1.2	126408
1biaA	321	47.83	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
1wkqA	164	48.32	c.97.1.2	109393
2a8yA	270	48.71		
1wwrA	171	50.01	c.97.1.2	121366
2pe3A	354	51.26		
2gduA	504	51.96	b.71.1.1,c.1.8.1	135032,135033
1aipC	196	53.15	a.5.2.2,d.43.1.1	58930,58931
1rjdA	334	54.27	c.66.1.37	97558
1je0A	236	54.68	c.56.2.1	66581
1l5jA	865	55.23	a.118.15.1,c.8.2.1,c.83.1.1	73592,73593,73594
2od0A	105	55.24		
2eayA	233	56.76		
1t4oA	117	60.42	d.50.1.1	106425
1usgA	346	61.24	c.93.1.1	99864
1uxyA	340	63.87	d.145.1.2,d.146.1.1	41748,41761
3ladA	476	65.37	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1tb3A	352	65.95	c.1.4.1	119205
1u58A	253	67.49		
2giaA	195	68.11	d.18.1.4	135221
1rypG	244	68.94	d.153.1.4	41938
1d3vA	323	70.53	c.42.1.1	32559
1m4lA	307	70.77	c.56.5.1	78604
1y5eA	169	71.30	c.57.1.1	122632
1jysA	242	71.44	c.56.2.1	77216
1h2eA	207	72.61	c.60.1.1	70857
1oi6A	205	72.92	b.82.1.1	103940
3cu3A	172	73.35		
1tcvA	287	74.53		
1oqeA	144	74.84	b.22.1.1	87286
1vixA	420	76.18	c.56.5.4,d.58.19.1	100777,100778
2r9zA	463	76.68		
2v05A	311	77.30		
2yquA	455	80.41		
2yx6A	121	80.69		
2fp7A	54	82.11		
1z15A	344	82.54		
1p3dA	475	88.13	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2g8sA	353	88.44		
2a9gA	418	88.90	d.126.1.4	126435
1c7gA	456	89.13	c.67.1.2	90415