# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000944	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.973	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	6.449		
1vixA	420	9.022	c.56.5.4,d.58.19.1	100777,100778
2f8mA	244	13.80		
2giaA	195	17.22	d.18.1.4	135221
1a3qA	285	19.60	b.1.18.1,b.2.5.3	21932,22447
3ladA	476	20.32	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2chcA	170	20.32		
1vzoA	355	24.79	d.144.1.7	108971
2a9gA	418	27.24	d.126.1.4	126435
1aipC	196	27.74	a.5.2.2,d.43.1.1	58930,58931
1sz7A	200	41.21		
1wwrA	171	41.28	c.97.1.2	121366
1je0A	236	44.20	c.56.2.1	66581
3cu3A	172	46.48		
2epgA	487	48.16		
1or8A	340	48.60	c.66.1.6	93451
2qa1A	500	49.69		
1xtzA	264	53.98		
3bfmA	235	54.26		
3bl6A	230	55.11		
1yrzA	528	57.80	b.29.1.23,b.67.2.1	123948,123949
1tueB	218	59.40	b.91.1.1	107324
2e1zA	415	65.02		
2i5uA	83	67.85		
2d1uA	104	68.01		
2qf7A	1165	69.83		
2bibA	547	70.10	b.109.1.1,d.157.1.8	128581,128582
1xvsA	126	71.23	b.1.23.1	116095
3cpxA	321	72.78		
2jugA	78	74.39		
1wkqA	164	75.29	c.97.1.2	109393
2pe3A	354	76.97		
2fvgA	340	77.63	b.49.3.1,c.56.5.4	134201,134202
1vqoU	66	79.63	g.39.1.6	120382
1jssA	224	80.16	d.129.3.2	71844
2h4aA	325	81.78		
2r9zA	463	82.59		
1xrjA	261	85.20	c.37.1.6	122256
2a8nA	144	88.25	c.97.1.2	126408
2r78A	117	88.95