# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001756	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.879	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	9.403		
1vixA	420	11.87	c.56.5.4,d.58.19.1	100777,100778
1vzoA	355	13.25	d.144.1.7	108971
2f8mA	244	16.88		
2giaA	195	17.21	d.18.1.4	135221
1a3qA	285	21.13	b.1.18.1,b.2.5.3	21932,22447
1aipC	196	24.29	a.5.2.2,d.43.1.1	58930,58931
3bl6A	230	25.27		
1je0A	236	25.38	c.56.2.1	66581
3ladA	476	29.45	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2chcA	170	30.01		
1yrzA	528	38.64	b.29.1.23,b.67.2.1	123948,123949
2epgA	487	39.38		
2qa1A	500	46.96		
2a9gA	418	50.68	d.126.1.4	126435
1tb3A	352	52.63	c.1.4.1	119205
1sz7A	200	54.41		
1xtzA	264	54.86		
2e1zA	415	55.54		
1tueB	218	58.42	b.91.1.1	107324
2h4aA	325	60.24		
1rj8A	164	61.96	b.22.1.1	97547
2qf7A	1165	63.29		
1xvsA	126	63.56	b.1.23.1	116095
1wwrA	171	68.29	c.97.1.2	121366
1or8A	340	68.55	c.66.1.6	93451
2a8yA	270	69.37		
3cu3A	172	70.71		
2bibA	547	73.00	b.109.1.1,d.157.1.8	128581,128582
1wkqA	164	77.35	c.97.1.2	109393
1tcvA	287	77.84		
3bfmA	235	77.96		
2i5uA	83	85.83