# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001272	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.840	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	12.06		
1vixA	420	13.64	c.56.5.4,d.58.19.1	100777,100778
2f8mA	244	17.54		
2chcA	170	19.49		
1vzoA	355	21.08	d.144.1.7	108971
1aipC	196	23.81	a.5.2.2,d.43.1.1	58930,58931
2giaA	195	25.85	d.18.1.4	135221
1je0A	236	27.66	c.56.2.1	66581
3bl6A	230	28.82		
1a3qA	285	33.21	b.1.18.1,b.2.5.3	21932,22447
3ladA	476	34.98	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1yrzA	528	36.46	b.29.1.23,b.67.2.1	123948,123949
2epgA	487	37.33		
1rj8A	164	41.76	b.22.1.1	97547
1tueB	218	42.31	b.91.1.1	107324
2bibA	547	42.42	b.109.1.1,d.157.1.8	128581,128582
3cu3A	172	45.55		
1sz7A	200	46.25		
1xvsA	126	49.34	b.1.23.1	116095
1or8A	340	55.98	c.66.1.6	93451
2a9gA	418	63.72	d.126.1.4	126435
1wwrA	171	63.93	c.97.1.2	121366
2qa1A	500	64.30		
2e1zA	415	67.58		
1tcvA	287	69.78		
2qf7A	1165	73.59		
1xtzA	264	74.53		
2v74B	346	77.31		
2a8yA	270	80.20		
2i5uA	83	81.32		
3bfmA	235	82.52		
2d1uA	104	84.43		
1xrjA	261	85.23	c.37.1.6	122256
3brcA	156	86.19		
1wkqA	164	86.62	c.97.1.2	109393