# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.2032	b.34.14.1,c.55.3.10	107539,107540
3bv0A	437	6.450		
1pbeA	394	11.95	c.3.1.2,d.16.1.2	30338,37869
2cz2A	223	15.87		
1y0yA	353	18.07	b.49.3.1,c.56.5.4	122514,122515
2fvgA	340	21.81	b.49.3.1,c.56.5.4	134201,134202
1axdA	209	22.97	a.45.1.1,c.47.1.5	17730,33024
2pe3A	354	25.03		
2dnjA	260	26.28	d.151.1.1	41790
1t2bA	397	26.29		
2r4iA	123	28.95		
3cu3A	172	32.21		
1rj8A	164	32.22	b.22.1.1	97547
1wwrA	171	32.71	c.97.1.2	121366
1wkqA	164	33.22	c.97.1.2	109393
1zin	217	37.31		
1dnpA	471	38.69	a.99.1.1,c.28.1.1	18775,31630
1axiA	191	41.26	a.26.1.1	16832
1iyhA	198	42.84	a.45.1.1,c.47.1.5	83790,83791
2hnlA	225	43.34		
1bif	469	45.45		
2giaA	195	49.03	d.18.1.4	135221
2q3uA	383	58.59	d.126.1.6	139809
2qf7A	1165	58.79		
1rtqA	299	65.03	c.56.5.4	97819
1a22A	180	65.23	a.26.1.1	16833
2db3A	434	66.30		
2chcA	170	70.12		
1x74A	360	75.54	c.123.1.1	121771
2i5uA	83	75.55		
2eayA	233	76.06		
2acoA	173	77.76		
2c4jA	218	80.10	a.45.1.1,c.47.1.5	129816,129817
1b4pA	217	80.26	a.45.1.1,c.47.1.5	83158,83159
1ouwA	152	83.10	b.77.3.1	93571
2rhsB	800	83.19		
2z83A	459	83.31		
2gciA	360	83.41	c.123.1.1	134983