# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.002618	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	2.256	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	7.283		
2chcA	170	16.47		
2fvgA	340	17.37	b.49.3.1,c.56.5.4	134201,134202
1vixA	420	24.40	c.56.5.4,d.58.19.1	100777,100778
1peaA	385	27.70	c.93.1.1	35662
2giaA	195	30.34	d.18.1.4	135221
2jugA	78	30.70		
2f8mA	244	33.47		
3cu3A	172	34.08		
1aipC	196	35.05	a.5.2.2,d.43.1.1	58930,58931
2eayA	233	36.50		
3bl6A	230	36.86		
1kjqA	391	42.36	b.84.2.1,c.30.1.1,d.142.1.2	72616,72617,72618
2g3mA	693	46.43		
2bibA	547	47.46	b.109.1.1,d.157.1.8	128581,128582
3cpxA	321	47.56		
1rypG	244	49.96	d.153.1.4	41938
3ladA	476	53.12	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1c7gA	456	54.52	c.67.1.2	90415
1biaA	321	55.34	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
2pe3A	354	55.35		
1z5hA	780	56.33		
2d5wA	603	56.67		
2a8yA	270	59.40		
1xtzA	264	59.70		
3bv0A	437	62.93		
1z15A	344	65.25		
1wwrA	171	66.06	c.97.1.2	121366
1je0A	236	69.74	c.56.2.1	66581
1vzoA	355	70.13	d.144.1.7	108971
2a9gA	418	70.66	d.126.1.4	126435
2d1uA	104	73.25		
1vqoU	66	74.19	g.39.1.6	120382
2fiwA	172	74.43	d.108.1.1	133539
1xrjA	261	75.42	c.37.1.6	122256
2yueA	168	75.43		
1xvsA	126	75.56	b.1.23.1	116095
2r78A	117	79.27		
2cghA	268	80.75		
1or8A	340	81.15	c.66.1.6	93451
2qa1A	500	81.21		
2v05A	311	82.25		
2dxuA	235	83.87		
1fecA	490	85.49	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1rtqA	299	86.89	c.56.5.4	97819
2zdhA	319	87.16		
1bif	469	88.83