# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1m2kA	249	0.2163	c.31.1.5	84754
1a3qA	285	0.2220	b.1.18.1,b.2.5.3	21932,22447
1u04A	771	0.2556	b.34.14.1,c.55.3.10	107539,107540
3c61A	314	0.6134		
1zy9A	564	1.150	b.30.5.11,c.1.8.13	125813,125814
1pbeA	394	2.810	c.3.1.2,d.16.1.2	30338,37869
2oxaA	600	3.008		
1ht6A	405	4.030	b.71.1.1,c.1.8.1	83629,83630
3cp8A	641	4.924		
2f8mA	244	4.931		
2e57A	637	7.548		
1fecA	490	7.715	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1fwxA	595	8.005	b.6.1.4,b.69.3.1	60069,60070
2epgA	487	9.083		
1wwrA	171	9.811	c.97.1.2	121366
1dnpA	471	9.841	a.99.1.1,c.28.1.1	18775,31630
1tb3A	352	11.42	c.1.4.1	119205
1z15A	344	11.54		
2hf0A	316	11.90		
2bgzA	299	12.64		
1ep0A	185	14.95	b.82.1.1	28080
1bif	469	16.76		
2q3uA	383	16.90	d.126.1.6	139809
2j07A	420	17.11	a.99.1.1,c.28.1.1	137891,137892
2hjhA	354	17.20		
3bijA	285	17.44		
1kwgA	645	17.63	b.71.1.1,c.1.8.1,c.23.16.5	77561,77562,77563
1e8cA	498	18.05	c.98.1.1,c.59.1.1,c.72.2.1	59377,59378,59379
1zz1A	369	18.23		
1ytvA	366	18.48	c.94.1.1	124016
1l9cA	389	18.66	c.3.1.2,d.16.1.3	77815,77816
3crrA	323	19.89		
3dhpA	496	20.19		
2r4iA	123	20.76		
3chbD	104	21.03	b.40.2.1	24970
2a8nA	144	21.53	c.97.1.2	126408
1djrD	103	22.01	b.40.2.1	24865
1ooyA	481	22.30	c.124.1.3,c.124.1.2	93388,93389
2h4aA	325	22.34		
1xtzA	264	23.26		
2h3bA	494	23.32		
1yc5A	246	26.26	c.31.1.5	122910
1p5dX	463	26.31	c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1	94138,94139,94140,94141
3cu3A	172	27.26		
2po3A	424	28.74		
2qf7A	1165	29.56		
1aipC	196	29.62	a.5.2.2,d.43.1.1	58930,58931
1peaA	385	30.42	c.93.1.1	35662
1p80A	753	30.51	c.23.16.3,e.5.1.1	94337,94338
2ha8A	184	30.51		
1yaaA	412	31.68	c.67.1.1	34280
1r6vA	671	32.11	c.41.1.1	111710
2bdvA	231	32.21	d.303.1.1	128345
2chcA	170	32.26		
1yrzA	528	32.40	b.29.1.23,b.67.2.1	123948,123949
2c0rA	362	32.47	c.67.1.4	129604
2i00A	406	34.68		
1vixA	420	38.13	c.56.5.4,d.58.19.1	100777,100778
3bl6A	230	38.30		
2qg7A	458	39.73		
2pvaA	345	40.54	d.153.1.3	41850
2i57A	438	41.66		
2ozgA	396	42.35		
2fvgA	340	43.15	b.49.3.1,c.56.5.4	134201,134202
2qgnA	322	43.23		
2iwkA	642	43.78		
2gxfA	142	44.63		
2v0hA	456	44.65		
1wqaA	455	46.19		
2gduA	504	48.38	b.71.1.1,c.1.8.1	135032,135033
2po1B	277	48.67		
2je6A	277	48.96		
2qa1A	500	49.06		
3ladA	476	50.24	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1wlgA	299	50.77	b.152.1.1	114726
2cirA	297	52.37		
1rhsA	296	53.74	c.46.1.2,c.46.1.2	32703,32704
2oqcA	327	55.68		
1ecfA	504	56.69	c.61.1.1,d.153.1.1	34053,41820
1ua7A	422	59.58	b.71.1.1,c.1.8.1	107759,107760
2cduA	452	59.87		
1oi6A	205	60.97	b.82.1.1	103940
1v58A	241	62.32	c.47.1.9,d.17.3.1	108371,108372
2giaA	195	64.33	d.18.1.4	135221
2i5gA	325	64.33		
2uytA	489	65.50		
2mbrA	340	68.14	d.145.1.2,d.146.1.1	41749,41762
1smdA	496	69.20	b.71.1.1,c.1.8.1	27768,28755
3cetA	334	70.48		
1yarA	233	70.86	d.153.1.4	122837
1ztuA	341	70.90		
2dnjA	260	72.57	d.151.1.1	41790
1ewkA	490	72.60	c.93.1.1	35712
2d5wA	603	73.37		
3d2lA	243	73.76		
2j5zA	221	75.09		
2olnA	397	75.51		
2cvhA	220	76.17		
1o59A	355	78.38	b.18.1.22,b.18.1.22	92495,92496
1tueB	218	79.47	b.91.1.1	107324
2g0wA	296	80.05	c.1.15.4	134503
2cn3A	737	80.28		
1xrjA	261	82.08	c.37.1.6	122256
2djlA	314	82.59		
1jv1A	505	82.96	c.68.1.5	71892
2qkbA	154	83.45		
1d3cA	686	83.93	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1g0uD	241	84.86	d.153.1.4	41949
7aatA	401	85.13	c.67.1.1	34250
2nx8A	179	87.05		
1tezA	474	87.28	a.99.1.1,c.28.1.1	112409,112410
1atg	231	89.94