# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001855	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	2.225	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	10.39		
1vzoA	355	13.81	d.144.1.7	108971
2chcA	170	16.53		
2f8mA	244	18.23		
1vixA	420	21.70	c.56.5.4,d.58.19.1	100777,100778
2fvgA	340	23.12	b.49.3.1,c.56.5.4	134201,134202
3bl6A	230	24.94		
1wwrA	171	26.83	c.97.1.2	121366
3cu3A	172	27.93		
1xtzA	264	31.33		
1c7gA	456	35.55	c.67.1.2	90415
1peaA	385	38.52	c.93.1.1	35662
2giaA	195	38.90	d.18.1.4	135221
1yrzA	528	40.05	b.29.1.23,b.67.2.1	123948,123949
1xvsA	126	41.14	b.1.23.1	116095
1aipC	196	42.03	a.5.2.2,d.43.1.1	58930,58931
2d5wA	603	45.43		
1je0A	236	51.60	c.56.2.1	66581
2eayA	233	52.95		
3ladA	476	58.26	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1fecA	490	60.22	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1bif	469	61.50		
2qf7A	1165	64.20		
1wkqA	164	66.04	c.97.1.2	109393
2a8yA	270	69.97		
3cpxA	321	71.04		
2jugA	78	76.90		
2bibA	547	76.91	b.109.1.1,d.157.1.8	128581,128582
2fiwA	172	81.16	d.108.1.1	133539
2d1uA	104	82.49		
3bv0A	437	84.32		
2a8nA	144	84.90	c.97.1.2	126408
1a3qA	285	85.75	b.1.18.1,b.2.5.3	21932,22447
1ep0A	185	88.30	b.82.1.1	28080