# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000854	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.397	c.3.1.2,d.16.1.2	30338,37869
1vixA	420	8.569	c.56.5.4,d.58.19.1	100777,100778
2chcA	170	16.94		
2r4iA	123	19.62		
3ladA	476	27.77	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1t4oA	117	28.49	d.50.1.1	106425
1yrzA	528	28.66	b.29.1.23,b.67.2.1	123948,123949
2bibA	547	29.48	b.109.1.1,d.157.1.8	128581,128582
2giaA	195	31.99	d.18.1.4	135221
1vzoA	355	32.23	d.144.1.7	108971
1vjzA	341	32.36	c.1.8.3	100838
2h4aA	325	35.07		
1a3qA	285	35.49	b.1.18.1,b.2.5.3	21932,22447
3bv0A	437	36.27		
1or8A	340	37.97	c.66.1.6	93451
1wwrA	171	39.37	c.97.1.2	121366
1xrjA	261	41.08	c.37.1.6	122256
2qa1A	500	41.33		
1aipC	196	48.03	a.5.2.2,d.43.1.1	58930,58931
3bl6A	230	53.41		
3cu3A	172	53.87		
1cfzA	162	58.47	c.56.1.1	33754
2h9bA	312	64.06		
1xvsA	126	65.92	b.1.23.1	116095
1bif	469	70.80		
1fecA	490	74.75	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2epgA	487	75.31		
2pe3A	354	76.45		
3cp8A	641	81.53		
1je0A	236	84.63	c.56.2.1	66581
2yquA	455	86.64		
2e1zA	415	88.00		
1t2bA	397	89.14