# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.005412	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	4.587	c.3.1.2,d.16.1.2	30338,37869
2chcA	170	18.56		
2r4iA	123	20.32		
1vixA	420	22.76	c.56.5.4,d.58.19.1	100777,100778
1vzoA	355	30.24	d.144.1.7	108971
1aipC	196	30.46	a.5.2.2,d.43.1.1	58930,58931
1wwrA	171	32.22	c.97.1.2	121366
1bif	469	33.57		
1xvsA	126	37.75	b.1.23.1	116095
2epgA	487	40.79		
3bv0A	437	41.97		
2pe3A	354	44.95		
1bcpB	199	46.14	b.40.2.1,d.169.1.2	25120,42429
3bl6A	230	51.00		
2giaA	195	52.58	d.18.1.4	135221
2fvgA	340	53.62	b.49.3.1,c.56.5.4	134201,134202
1c96A	753	54.15	c.8.2.1,c.83.1.1	30727,35403
1or8A	340	54.61	c.66.1.6	93451
1twiA	434	60.98	b.49.2.3,c.1.6.1	107399,107400
2f8mA	244	63.75		
1zin	217	73.40		
1t4oA	117	75.36	d.50.1.1	106425
3cu3A	172	75.96		
1tb3A	352	78.76	c.1.4.1	119205
1rtqA	299	79.65	c.56.5.4	97819
1fecA	490	80.83	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1yrzA	528	81.00	b.29.1.23,b.67.2.1	123948,123949
1y0yA	353	82.95	b.49.3.1,c.56.5.4	122514,122515
1vjzA	341	83.92	c.1.8.3	100838
3ladA	476	84.32	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2a8nA	144	87.99	c.97.1.2	126408
2qmaA	497	88.47