# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.003731	b.34.14.1,c.55.3.10	107539,107540
1pbeA	394	1.698	c.3.1.2,d.16.1.2	30338,37869
2r4iA	123	11.97		
1vzoA	355	12.78	d.144.1.7	108971
2chcA	170	15.51		
2f8mA	244	17.27		
2giaA	195	23.59	d.18.1.4	135221
3bl6A	230	24.54		
2epgA	487	25.75		
1vixA	420	31.32	c.56.5.4,d.58.19.1	100777,100778
1yrzA	528	31.60	b.29.1.23,b.67.2.1	123948,123949
2qa1A	500	31.87		
3ladA	476	32.15	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
1or8A	340	33.42	c.66.1.6	93451
1wwrA	171	34.46	c.97.1.2	121366
2h4aA	325	36.27		
2d1uA	104	44.84		
2a9gA	418	48.06	d.126.1.4	126435
1bif	469	49.02		
2e1zA	415	51.50		
1bcpB	199	58.33	b.40.2.1,d.169.1.2	25120,42429
1aipC	196	58.55	a.5.2.2,d.43.1.1	58930,58931
3bv0A	437	59.20		
1tcvA	287	63.01		
2pe3A	354	67.34		
1je0A	236	67.57	c.56.2.1	66581
3cu3A	172	71.79		
2yueA	168	77.31		
2yquA	455	81.75		
1xtzA	264	84.21		
1twiA	434	85.20	b.49.2.3,c.1.6.1	107399,107400
1a3qA	285	88.94	b.1.18.1,b.2.5.3	21932,22447