# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.002015	b.34.14.1,c.55.3.10	107539,107540
2zctA	249	3.381		
1t2bA	397	9.343		
1aipC	196	15.64	a.5.2.2,d.43.1.1	58930,58931
2r4iA	123	17.99		
1rtqA	299	19.24	c.56.5.4	97819
1x0rA	249	20.88	c.47.1.10	121562
3cu3A	172	22.15		
1qazA	351	30.34	a.102.3.1	18848
3bdzA	397	31.59		
2pe3A	354	33.06		
2eu8A	216	36.00		
1tb3A	352	41.79	c.1.4.1	119205
1y0yA	353	50.66	b.49.3.1,c.56.5.4	122514,122515
1y08A	323	53.52	d.3.1.12	116280
2d3qA	442	54.21	d.58.4.14	131214
2qyvA	487	57.94		
1zin	217	59.89		
2yvlA	248	63.16		
1a3qA	285	63.77	b.1.18.1,b.2.5.3	21932,22447
1o59A	355	66.03	b.18.1.22,b.18.1.22	92495,92496
3c9qA	205	67.79		
1lrzA	426	68.38	a.2.7.4,d.108.1.4,d.108.1.4	78167,78168,78169
1iyhA	198	69.02	a.45.1.1,c.47.1.5	83790,83791
1h1nA	305	70.99	c.1.8.3	70855
1mg7A	417	71.84	d.14.1.6,d.58.26.6	84954,84955
2choA	716	76.90	a.246.1.1,c.1.8.10,d.92.2.3	130479,130480,130481
1pbeA	394	79.38	c.3.1.2,d.16.1.2	30338,37869
3bv0A	437	80.09		
1zxkA	98	84.68		
1s68A	249	84.90	d.142.2.4	98591
3ladA	476	85.63	c.3.1.5,c.3.1.5,d.87.1.1	30573,30574,40208
2a9gA	418	86.23	d.126.1.4	126435
1fecA	490	87.38	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1rypG	244	89.44	d.153.1.4	41938