Best Alignments for T0487

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1u04A	3.3149e-04	1u04A/T0487-1u04A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.34.14.1 c.55.3.10
3bmvA	3.4357e+01	3bmvA/T0487-3bmvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1uw6A	4.0797e+01	1uw6A/T0487-1uw6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jyoA	4.2708e+01	1jyoA/T0487-1jyoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.198.1.1
2r6vA	4.5361e+01	2r6vA/T0487-2r6vA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2zjrT	4.5433e+01	2zjrT/T0487-2zjrT-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3cu3A	4.6608e+01	3cu3A/T0487-3cu3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igrA	4.8085e+01	2igrA/T0487-2igrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2e7zA	5.4577e+01	2e7zA/T0487-2e7zA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1rj8A	5.5822e+01	1rj8A/T0487-1rj8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.22.1.1
1pbe	5.6005e+01	1pbe/T0487-1pbe-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2napA	5.6251e+01	2napA/T0487-2napA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v8qA	5.8759e+01	1v8qA/T0487-1v8qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2gwgA	6.1758e+01	2gwgA/T0487-2gwgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2giaA	6.1965e+01	2giaA/T0487-2giaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.18.1.4
2qa1A	6.2133e+01	2qa1A/T0487-2qa1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bj0A	6.3155e+01	2bj0A/T0487-2bj0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vzoA	6.3928e+01	1vzoA/T0487-1vzoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.144.1.7
1rf6A	6.5813e+01	1rf6A/T0487-1rf6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2okgA	6.6283e+01	2okgA/T0487-2okgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001