# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000837	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	12.27		
2qa1A	500	21.24		
1vzoA	355	21.33	d.144.1.7	108971
1jyoA	130	23.54	d.198.1.1	67483
1pbe	394	25.95		
1k0iA	394	27.17	c.3.1.2,d.16.1.2	67942,67943
3cu3A	172	28.23		
1rj8A	164	30.35	b.22.1.1	97547
1tkjA	284	35.29	c.56.5.4	119296
1oi6A	205	42.09	b.82.1.1	103940
1tzaA	134	42.90	b.1.23.1	107468
1upiA	225	45.26	b.82.1.1	99757
1fecA	490	48.01	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2f8mA	244	49.88		
2b78A	385	51.91	b.122.1.9,c.66.1.51	128025,128026
1p3dA	475	55.94	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2gvkA	317	56.99	d.58.4.14	135782
2o0tA	467	57.51		
1lt5D	103	57.80	b.40.2.1	24875
1gjwA	637	57.85	b.71.1.1,c.1.8.1	60582,60583
3c9qA	205	59.30		
1uok	558	61.67		
3d9rA	135	67.16		
2f1wA	158	68.58		
1uf5A	303	74.09	d.160.1.2	107808
1djrD	103	75.31	b.40.2.1	24865
1d5yA	292	78.55	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1qwdA	177	79.64	b.60.1.1	96471
3chbD	104	80.18	b.40.2.1	24970
2c8mA	262	83.64		
2fiwA	172	84.28	d.108.1.1	133539
2a8nA	144	89.84	c.97.1.2	126408