# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001423	b.34.14.1,c.55.3.10	107539,107540
1pbe	394	9.750		
3cu3A	172	12.74		
2qa1A	500	21.56		
1vzoA	355	24.32	d.144.1.7	108971
1k0iA	394	24.94	c.3.1.2,d.16.1.2	67942,67943
3d9rA	135	25.23		
1oi6A	205	31.16	b.82.1.1	103940
1p3dA	475	36.75	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
2rfrA	155	37.20		
1upiA	225	37.93	b.82.1.1	99757
3bmvA	683	40.60		
1tkjA	284	41.57	c.56.5.4	119296
1uf5A	303	45.33	d.160.1.2	107808
3c9qA	205	45.80		
1rj8A	164	47.29	b.22.1.1	97547
2chcA	170	47.66		
1gjwA	637	59.06	b.71.1.1,c.1.8.1	60582,60583
1jyoA	130	60.86	d.198.1.1	67483
2dvtA	327	62.54	c.1.9.15	131793
1h7wA	1025	74.73	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1z8fA	228	80.61		
2giaA	195	82.41	d.18.1.4	135221
1fecA	490	86.98	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1o6zA	303	88.86	c.2.1.5,d.162.1.1	81107,81108
1hyoA	421	88.99	b.34.8.1,d.177.1.1	59001,59002
2fvgA	340	89.70	b.49.3.1,c.56.5.4	134201,134202
2hqsA	415	89.91	b.68.4.1,c.51.2.1	136662,136663