# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.002612	b.34.14.1,c.55.3.10	107539,107540
1jyoA	130	2.706	d.198.1.1	67483
3bmvA	683	7.628		
1pbe	394	11.69		
1vzoA	355	13.93	d.144.1.7	108971
2jugA	78	19.13		
2o0tA	467	22.30		
2gvkA	317	25.20	d.58.4.14	135782
1k0iA	394	26.75	c.3.1.2,d.16.1.2	67942,67943
2giaA	195	26.80	d.18.1.4	135221
1h7wA	1025	26.98	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1oi6A	205	27.05	b.82.1.1	103940
2qa1A	500	27.36		
3dhpA	496	29.18		
3cu3A	172	29.53		
1hyoA	421	32.50	b.34.8.1,d.177.1.1	59001,59002
1uf5A	303	33.20	d.160.1.2	107808
1v37A	177	33.64	c.60.1.1	113497
2a8nA	144	33.78	c.97.1.2	126408
1pbeA	394	35.66	c.3.1.2,d.16.1.2	30338,37869
1vqoU	66	36.66	g.39.1.6	120382
1ohvA	472	37.53	c.67.1.4	93031
1p3dA	475	41.03	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1tkjA	284	45.29	c.56.5.4	119296
1z8fA	228	45.35		
3c9qA	205	46.97		
2fvgA	340	47.49	b.49.3.1,c.56.5.4	134201,134202
2c95A	196	48.79		
1c96A	753	51.30	c.8.2.1,c.83.1.1	30727,35403
2f2hA	773	52.74	b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13	132818,132819,132820,132821
2dxuA	235	53.73		
1r9lA	309	57.79	c.94.1.1	97262
1rcf	169	57.84		
2p75A	177	57.98		
2anpA	291	61.11	c.56.5.4	127056
1smd	496	63.50		
1upiA	225	72.18	b.82.1.1	99757
2chcA	170	72.38		
2d1sA	548	73.62		
2ffuA	501	75.34		
1rj8A	164	75.70	b.22.1.1	97547
1riiA	265	76.72	c.60.1.1	111807
1biaA	321	78.42	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
1bcpB	199	78.84	b.40.2.1,d.169.1.2	25120,42429
2ga1A	106	80.82	a.4.1.16	134850
3c96A	415	88.34