# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000412	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	4.630		
1d5yA	292	12.73	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2qa1A	500	14.38		
2giaA	195	18.50	d.18.1.4	135221
1jyoA	130	21.64	d.198.1.1	67483
1tkjA	284	33.04	c.56.5.4	119296
1fecA	490	33.09	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
3cu3A	172	33.29		
1vzoA	355	37.57	d.144.1.7	108971
1rj8A	164	42.37	b.22.1.1	97547
1z8fA	228	50.65		
2c8mA	262	56.80		
2b78A	385	58.79	b.122.1.9,c.66.1.51	128025,128026
1pbe	394	60.77		
2oc3A	303	62.72		
2exuA	200	69.69		
2o0tA	467	72.16		
1o6zA	303	72.75	c.2.1.5,d.162.1.1	81107,81108
1tueB	218	77.23	b.91.1.1	107324
1h7wA	1025	77.84	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1k0iA	394	80.91	c.3.1.2,d.16.1.2	67942,67943
2chcA	170	82.55		
2oatA	439	82.80	c.67.1.4	34452
2jaeA	489	84.26		
1tiqA	180	84.32	d.108.1.1	107010
1y51A	88	86.90		
2fvgA	340	87.01	b.49.3.1,c.56.5.4	134201,134202
1smdA	496	89.82	b.71.1.1,c.1.8.1	27768,28755