# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000715	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	5.400		
1jyoA	130	10.44	d.198.1.1	67483
1d5yA	292	11.01	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1vzoA	355	20.82	d.144.1.7	108971
2giaA	195	22.86	d.18.1.4	135221
1rj8A	164	23.47	b.22.1.1	97547
2qa1A	500	23.95		
1pbe	394	39.20		
1h7wA	1025	45.27	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1fecA	490	45.90	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1o6zA	303	47.21	c.2.1.5,d.162.1.1	81107,81108
1tkjA	284	49.32	c.56.5.4	119296
2o0tA	467	49.48		
3cu3A	172	53.58		
1z8fA	228	56.34		
1k0iA	394	56.94	c.3.1.2,d.16.1.2	67942,67943
1tueB	218	58.55	b.91.1.1	107324
2g84A	197	58.79	c.97.1.2	134766
1aipC	196	59.53	a.5.2.2,d.43.1.1	58930,58931
1oi6A	205	60.34	b.82.1.1	103940
2c8mA	262	60.66		
2b78A	385	62.67	b.122.1.9,c.66.1.51	128025,128026
2f1wA	158	74.27		
2oc3A	303	74.93		
1uok	558	76.46		
2exuA	200	77.37		
1zgsA	447	77.55		
1upiA	225	77.73	b.82.1.1	99757
2i5uA	83	89.60