# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.001648	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	6.528		
1d5yA	292	12.66	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1jyoA	130	15.05	d.198.1.1	67483
2giaA	195	18.10	d.18.1.4	135221
2qa1A	500	21.06		
1vzoA	355	24.74	d.144.1.7	108971
1rj8A	164	31.37	b.22.1.1	97547
2c8mA	262	33.54		
3cu3A	172	40.32		
1tkjA	284	43.34	c.56.5.4	119296
1uok	558	49.50		
2b78A	385	53.21	b.122.1.9,c.66.1.51	128025,128026
1fecA	490	57.66	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1oi6A	205	58.33	b.82.1.1	103940
2f1wA	158	60.93		
2o0tA	467	62.76		
1upiA	225	67.34	b.82.1.1	99757
2i5uA	83	74.07		
1tueB	218	75.28	b.91.1.1	107324
2exuA	200	79.20		
1pbe	394	82.22		
1k0iA	394	82.57	c.3.1.2,d.16.1.2	67942,67943
1zgsA	447	85.59