# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.01432	b.34.14.1,c.55.3.10	107539,107540
2cz2A	223	1.572		
1fw1A	216	4.113	a.45.1.1,c.47.1.5	60051,60052
2dc5A	231	5.882		
1axdA	209	9.450	a.45.1.1,c.47.1.5	17730,33024
2gsqA	202	10.30	a.45.1.1,c.47.1.5	17715,33009
2qagB	427	19.57		
1rj8A	164	21.33	b.22.1.1	97547
2giaA	195	33.29	d.18.1.4	135221
1uf5A	303	35.03	d.160.1.2	107808
1qj5A	429	37.95	c.67.1.4	34493
2aawA	222	44.91	a.45.1.1,c.47.1.5	126496,126497
2c4jA	218	47.14	a.45.1.1,c.47.1.5	129816,129817
1jyoA	130	47.80	d.198.1.1	67483
1f89A	291	50.68	d.160.1.1	64988
2cvdA	198	54.55	a.45.1.1,c.47.1.5	130861,130862
2fvgA	340	57.98	b.49.3.1,c.56.5.4	134201,134202
1m0uA	249	58.80	a.45.1.1,c.47.1.5	78359,78360
1qwdA	177	59.26	b.60.1.1	96471
1q0uA	219	59.81	c.37.1.19	95512
7a3hA	303	59.98	c.1.8.3	28817
2f1wA	158	64.25		
1iyhA	198	65.11	a.45.1.1,c.47.1.5	83790,83791
1pbe	394	65.87		
2f6rA	281	67.08		
1oe8A	211	67.61	a.45.1.1,c.47.1.5	86905,86906
3cu3A	172	70.30		
2ga1A	106	72.13	a.4.1.16	134850
1dt9A	437	73.25	c.55.4.2,d.79.3.2,d.91.1.1	33738,39815,40257
1tkjA	284	73.28	c.56.5.4	119296
1k0dA	260	74.71	a.45.1.1,c.47.1.5	67930,67931
1gnwA	211	75.75	a.45.1.1,c.47.1.5	17727,33021
1d5yA	292	76.59	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2gciA	360	80.57	c.123.1.1	134983
1fecA	490	83.34	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2hnlA	225	84.08		
1hyoA	421	87.79	b.34.8.1,d.177.1.1	59001,59002