# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000401	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	1.681		
1jyoA	130	12.34	d.198.1.1	67483
3cu3A	172	16.71		
2giaA	195	20.00	d.18.1.4	135221
1fecA	490	25.04	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1uf5A	303	25.73	d.160.1.2	107808
1biaA	321	31.22	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
1pbe	394	35.89		
1q0uA	219	37.79	c.37.1.19	95512
2fiwA	172	40.93	d.108.1.1	133539
1z8fA	228	41.66		
2jugA	78	45.91		
1ro0A	216	46.63	d.264.1.2	97664
1k0iA	394	49.67	c.3.1.2,d.16.1.2	67942,67943
2fvgA	340	50.38	b.49.3.1,c.56.5.4	134201,134202
2hwjA	205	52.37		
2b78A	385	52.84	b.122.1.9,c.66.1.51	128025,128026
3dhpA	496	52.92		
2f8mA	244	52.96		
1d5yA	292	53.04	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1d3cA	686	54.31	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
2bwrA	401	55.25		
2qa1A	500	56.72		
1aipC	196	57.31	a.5.2.2,d.43.1.1	58930,58931
1erzA	303	59.95	d.160.1.2	59498
1rj8A	164	60.23	b.22.1.1	97547
1h7wA	1025	62.18	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
2icgA	160	63.36		
1tkjA	284	64.54	c.56.5.4	119296
1riiA	265	64.56	c.60.1.1	111807
1vqoU	66	66.48	g.39.1.6	120382
1wqwA	235	67.94	b.34.1.1,d.104.1.2	121179,121180
1qq9A	284	71.06	c.56.5.4	33841
2o0tA	467	71.49		
1vzoA	355	72.73	d.144.1.7	108971
2dxuA	235	77.76		
1oi6A	205	77.77	b.82.1.1	103940
2eayA	233	79.27		
3d9rA	135	80.72		
2a8nA	144	82.28	c.97.1.2	126408
1lt5D	103	85.52	b.40.2.1	24875
2oc3A	303	87.08		
2d1sA	548	87.70		
1nszA	347	88.06	b.30.5.4	80724
3c9qA	205	88.61