# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u04A 771 0.02808 b.34.14.1,c.55.3.10 107539,107540 1a3qA 285 0.8933 b.1.18.1,b.2.5.3 21932,22447 2bgzA 299 2.061 1zy9A 564 2.195 b.30.5.11,c.1.8.13 125813,125814 3bgaA 1010 3.384 1upiA 225 4.669 b.82.1.1 99757 1vlbA 907 4.672 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1d5tA 433 5.751 c.3.1.3,d.16.1.6 30422,37986 1m2kA 249 5.974 c.31.1.5 84754 1wlgA 299 7.705 b.152.1.1 114726 2f8mA 244 7.911 1b4vA 504 9.209 c.3.1.2,d.16.1.1 30334,37865 2oxaA 600 9.742 1n4wA 504 9.915 c.3.1.2,d.16.1.1 91676,91677 1jyoA 130 9.936 d.198.1.1 67483 1djrD 103 10.52 b.40.2.1 24865 2vhxA 377 11.14 3chbD 104 11.75 b.40.2.1 24970 2oc3A 303 11.85 1oi6A 205 14.01 b.82.1.1 103940 3crrA 323 14.64 2qa1A 500 14.90 3dhpA 496 16.24 1udcA 338 16.53 c.2.1.2 29785 2ieaA 886 17.80 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1pbe 394 18.37 1ep0A 185 21.86 b.82.1.1 28080 1vkdA 338 23.06 b.67.2.4 108644 1v2aA 210 24.94 a.45.1.1,c.47.1.5 100263,100264 2hjhA 354 27.01 2iwkA 642 27.32 2giaA 195 28.28 d.18.1.4 135221 2ha8A 184 28.40 1d5yA 292 28.43 a.4.1.8,a.4.1.8,d.60.1.2 16055,16056,39532 2cirA 297 28.78 2ntpA 342 28.95 3cu3A 172 29.32 2ozgA 396 29.36 2vouA 397 29.36 1l9cA 389 29.78 c.3.1.2,d.16.1.3 77815,77816 1k0iA 394 29.88 c.3.1.2,d.16.1.2 67942,67943 2v7bA 529 30.95 1e43A 483 31.49 b.71.1.1,c.1.8.1 59217,59218 2z06A 252 31.94 2o0tA 467 32.37 1wkbA 810 34.14 2gduA 504 35.22 b.71.1.1,c.1.8.1 135032,135033 2bcgG 453 35.99 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 3bc9A 599 36.90 2po1B 277 38.02 2a8nA 144 39.49 c.97.1.2 126408 2qg7A 458 39.50 3cox 507 40.88 1jdcA 429 41.36 b.71.1.1,c.1.8.1 27789,28776 1ytvA 366 41.92 c.94.1.1 124016 1dnpA 471 42.26 a.99.1.1,c.28.1.1 18775,31630 1gcyA 527 42.35 b.71.1.1,c.1.8.1 27788,28775 2as0A 396 42.53 b.122.1.9,c.66.1.51 127227,127228 1pn2A 280 42.96 d.38.1.4,d.38.1.4 94930,94931 2qt6A 498 44.00 1biaA 321 44.69 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 1rhs 296 44.80 1gg4A 452 45.25 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 1vcvA 226 46.28 c.1.10.1 119988 1fecA 490 46.39 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2dh2A 424 46.90 1aipC 196 47.30 a.5.2.2,d.43.1.1 58930,58931 3d9rA 135 48.39 1l8aA 886 48.76 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 2jhnA 295 49.32 2f1wA 158 49.66 1p5dX 463 49.71 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1rj8A 164 50.33 b.22.1.1 97547 1z15A 344 51.51 1nuiA 255 51.73 e.13.1.2,g.41.3.2 86194,86195 1r9lA 309 52.15 c.94.1.1 97262 2r00A 336 53.66 2zc0A 407 54.46 2pvaA 345 54.64 d.153.1.3 41850 2b78A 385 55.55 b.122.1.9,c.66.1.51 128025,128026 1ro0A 216 56.38 d.264.1.2 97664 1rm6A 769 56.79 d.41.1.1,d.133.1.1 111872,111873 1jchA 551 57.87 b.101.1.1,b.110.1.1,h.4.9.1 66491,66492,66493 1s1mA 545 58.87 c.23.16.1,c.37.1.10 105201,105202 1h3qA 140 59.14 d.110.4.3 76652 2j07A 420 59.70 a.99.1.1,c.28.1.1 137891,137892 2ffiA 288 59.71 c.1.9.15 133385 1qwdA 177 61.20 b.60.1.1 96471 1qw9A 502 64.64 b.71.1.2,c.1.8.3 96466,96467 1sw5A 275 65.42 c.94.1.1 106069 1qdeA 224 65.92 c.37.1.19 32410 1ys4A 354 66.86 1ooyA 481 67.30 c.124.1.3,c.124.1.2 93388,93389 2hjsA 340 67.75 c.2.1.3,d.81.1.1 136547,136548 1j31A 262 68.10 d.160.1.2 90808 1pd21 199 69.89 1z8fA 228 71.76 2p9wA 334 73.65 1kdvA 370 73.95 c.41.1.2 68486 1uf5A 303 74.68 d.160.1.2 107808 1hzoA 271 76.11 e.3.1.1 71092 1wqwA 235 76.30 b.34.1.1,d.104.1.2 121179,121180 1lt5D 103 77.24 b.40.2.1 24875 2d1sA 548 77.28 2dxuA 235 78.89 2bdvA 231 79.80 d.303.1.1 128345 1yreA 197 79.92 d.108.1.1 123919 1hrdA 449 80.64 c.2.1.7,c.58.1.1 30219,33867 1smdA 496 80.98 b.71.1.1,c.1.8.1 27768,28755 3c61A 314 81.78 2olnA 397 82.27 2fiwA 172 82.94 d.108.1.1 133539 3cneA 175 83.93 2q4oA 215 87.66 c.129.1.1 139872 1tb3A 352 88.20 c.1.4.1 119205 1ctn 540 88.41 2b5eA 504 88.96 c.47.1.2,c.47.1.2,c.47.1.2,c.47.1.2 127888,127889,127890,127891 1hyoA 421 89.73 b.34.8.1,d.177.1.1 59001,59002