# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000256	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	3.262		
1fecA	490	8.848	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1jyoA	130	8.863	d.198.1.1	67483
3cu3A	172	14.95		
2giaA	195	20.77	d.18.1.4	135221
1d5yA	292	30.33	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1rj8A	164	32.55	b.22.1.1	97547
1z8fA	228	39.92		
1pbe	394	40.92		
1vzoA	355	42.42	d.144.1.7	108971
1k0iA	394	42.92	c.3.1.2,d.16.1.2	67942,67943
1oi6A	205	45.91	b.82.1.1	103940
2fiwA	172	48.66	d.108.1.1	133539
1uok	558	59.24		
3dhpA	496	60.33		
1tkjA	284	62.70	c.56.5.4	119296
1h7wA	1025	64.14	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1ro0A	216	64.59	d.264.1.2	97664
2f8mA	244	65.03		
1d3cA	686	66.45	b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1	21827,22496,27734,28721
1uf5A	303	67.24	d.160.1.2	107808
1aipC	196	68.00	a.5.2.2,d.43.1.1	58930,58931
1upiA	225	68.91	b.82.1.1	99757
3d9rA	135	69.41		
1smd	496	72.85		
2jugA	78	73.43		
1qq9A	284	74.45	c.56.5.4	33841
2qa1A	500	74.89		
1biaA	321	76.77	a.4.5.1,b.34.1.1,d.104.1.2	16083,24447,40787
2icgA	160	79.22		
1lt5D	103	81.63	b.40.2.1	24875
2exuA	200	85.40		
1o6zA	303	88.35	c.2.1.5,d.162.1.1	81107,81108
1tueB	218	88.57	b.91.1.1	107324