# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000552	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	7.729		
1pbe	394	16.16		
1vzoA	355	18.06	d.144.1.7	108971
1h7wA	1025	19.61	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1jyoA	130	20.47	d.198.1.1	67483
1z8fA	228	20.71		
2jaeA	489	22.49		
1zgsA	447	24.77		
2oc3A	303	27.41		
2giaA	195	28.54	d.18.1.4	135221
3cu3A	172	29.88		
1rj8A	164	33.61	b.22.1.1	97547
1d5yA	292	40.39	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1k0iA	394	42.12	c.3.1.2,d.16.1.2	67942,67943
2qa1A	500	44.79		
1nszA	347	50.91	b.30.5.4	80724
1lt5D	103	65.84	b.40.2.1	24875
2c8mA	262	70.79		
2ze0A	555	72.16		
2dc5A	231	74.99		
1v37A	177	75.35	c.60.1.1	113497
2f1wA	158	76.75		
2rfrA	155	77.50		
1zdsA	336	78.31	b.6.1.3,b.6.1.3	124952,124953
2gvkA	317	79.12	d.58.4.14	135782
1upiA	225	81.03	b.82.1.1	99757
1qnrA	344	81.32	c.1.8.3	28834
2a2rA	210	81.40	a.45.1.1,c.47.1.5	126058,126059
1q0uA	219	82.54	c.37.1.19	95512
2oatA	439	83.17	c.67.1.4	34452
1uok	558	84.01		
1tkjA	284	85.40	c.56.5.4	119296
1djrD	103	85.63	b.40.2.1	24865
2qagB	427	87.39		
3d9rA	135	88.15		
2gsqA	202	89.91	a.45.1.1,c.47.1.5	17715,33009