# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000956	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	7.082		
1jyoA	130	12.68	d.198.1.1	67483
2giaA	195	27.54	d.18.1.4	135221
1h7wA	1025	27.58	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1z8fA	228	31.05		
3cu3A	172	32.11		
1tkjA	284	39.80	c.56.5.4	119296
1rj8A	164	52.15	b.22.1.1	97547
1vzoA	355	54.16	d.144.1.7	108971
1k0iA	394	54.53	c.3.1.2,d.16.1.2	67942,67943
2a8nA	144	55.99	c.97.1.2	126408
1v37A	177	56.70	c.60.1.1	113497
7a3hA	303	60.72	c.1.8.3	28817
2o0tA	467	60.98		
1oi6A	205	62.33	b.82.1.1	103940
1fecA	490	68.52	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
2anpA	291	70.69	c.56.5.4	127056
3dhpA	496	72.12		
1oatA	439	79.46	c.67.1.4	34461
1q0uA	219	81.25	c.37.1.19	95512
1d5yA	292	82.10	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
2gsqA	202	84.65	a.45.1.1,c.47.1.5	17715,33009
1pbe	394	85.06		
2dc5A	231	86.84		
1cmiA	85	88.27	d.39.1.1	38551
1aipC	196	88.56	a.5.2.2,d.43.1.1	58930,58931