# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.000931	b.34.14.1,c.55.3.10	107539,107540
3bmvA	683	7.440		
2giaA	195	12.52	d.18.1.4	135221
1vzoA	355	16.89	d.144.1.7	108971
1z8fA	228	17.31		
1h7wA	1025	17.38	a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5	15683,28628,30324,30609,39007
1jyoA	130	20.89	d.198.1.1	67483
1d5yA	292	25.58	a.4.1.8,a.4.1.8,d.60.1.2	16055,16056,39532
1nszA	347	33.07	b.30.5.4	80724
2o0tA	467	33.44		
2qa1A	500	34.27		
3cu3A	172	40.14		
1lt5D	103	43.40	b.40.2.1	24875
1djrD	103	45.54	b.40.2.1	24865
2c8mA	262	46.48		
1pbe	394	51.39		
1oi6A	205	53.09	b.82.1.1	103940
2exuA	200	55.80		
3chbD	104	56.10	b.40.2.1	24970
1rj8A	164	58.53	b.22.1.1	97547
2fiwA	172	70.52	d.108.1.1	133539
2jaeA	489	79.12		
1uok	558	81.33		
1tkjA	284	82.32	c.56.5.4	119296
2a8nA	144	82.60	c.97.1.2	126408
1k0iA	394	83.05	c.3.1.2,d.16.1.2	67942,67943
1p3dA	475	84.36	c.5.1.1,c.59.1.1,c.72.2.1	87728,87729,87730
1riiA	265	86.51	c.60.1.1	111807
1hyoA	421	88.17	b.34.8.1,d.177.1.1	59001,59002