# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1u04A	771	0.008285	b.34.14.1,c.55.3.10	107539,107540
7a3hA	303	10.10	c.1.8.3	28817
2gsqA	202	16.83	a.45.1.1,c.47.1.5	17715,33009
1fecA	490	19.39	c.3.1.5,c.3.1.5,d.87.1.1	30489,30490,40176
1v37A	177	19.96	c.60.1.1	113497
2zctA	249	22.63		
1v2aA	210	30.54	a.45.1.1,c.47.1.5	100263,100264
3c9qA	205	32.23		
2dc5A	231	33.43		
3cu3A	172	37.26		
2vvnA	737	37.81		
1aipC	196	38.81	a.5.2.2,d.43.1.1	58930,58931
1o6zA	303	40.16	c.2.1.5,d.162.1.1	81107,81108
2o5cA	659	46.15		
1rj8A	164	48.97	b.22.1.1	97547
1l5aA	436	50.11	c.43.1.2,c.43.1.2	75923,75924
1y08A	323	51.51	d.3.1.12	116280
1tkjA	284	52.31	c.56.5.4	119296
1upiA	225	54.67	b.82.1.1	99757
1uf5A	303	57.30	d.160.1.2	107808
2c8mA	262	58.83		
2io8A	619	58.93	c.30.1.7,d.3.1.15,d.142.1.8	137549,137550,137551
2cz2A	223	61.41		
2jgpA	520	66.34		
3bmvA	683	69.10		
2p75A	177	70.17		
1tvnA	293	70.82	c.1.8.3	119360
1axdA	209	71.62	a.45.1.1,c.47.1.5	17730,33024
2qagB	427	74.87		
1o70A	324	76.86	b.118.1.1,b.118.1.1	81115,81116
1oi6A	205	78.25	b.82.1.1	103940
2rfrA	155	78.90		
1iyhA	198	81.21	a.45.1.1,c.47.1.5	83790,83791
2pe3A	354	82.77		
2f5jA	181	86.94