# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cegA 323 2.464 2v7bA 529 3.155 1erzA 303 3.294 d.160.1.2 59498 1uf5A 303 9.023 d.160.1.2 107808 1k7kA 221 12.07 c.51.4.1 72104 2fp3A 316 13.64 2ordA 397 14.19 1g5aA 628 15.08 b.71.1.1,c.1.8.1 65152,65153 1ur1A 378 16.63 c.1.8.3 99804 2vhhA 405 17.11 1r85A 379 18.34 c.1.8.3 104839 2odfA 257 18.43 1efpB 252 19.40 c.26.2.3 31636 1bj4A 470 22.04 c.67.1.4 34479 1b43A 340 23.50 a.60.7.1,c.120.1.2 18092,33362 1h3gA 601 24.66 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1pg4A 652 25.80 e.23.1.1 88067 2qwxA 231 26.32 2rhsB 800 28.58 1dp4A 435 28.58 c.93.1.1 35710 1oatA 439 29.25 c.67.1.4 34461 1nmsA 249 30.06 c.17.1.1 85879 1tezA 474 30.27 a.99.1.1,c.28.1.1 112409,112410 1owlA 484 31.65 a.99.1.1,c.28.1.1 93647,93648 2bylA 439 33.83 c.67.1.4 129490 2nutA 769 35.07 1w32A 348 35.39 c.1.8.3 114120 1n82A 331 36.14 c.1.8.3 91703 2j6aA 141 36.73 2q16A 219 37.73 2qxxA 190 37.90 1u94A 356 39.73 c.37.1.11,d.48.1.1 107743,107744 1n2eA 300 40.72 c.26.1.4 85268 2byjA 439 40.73 c.67.1.4 129483 1oltA 457 43.70 c.1.28.2 93334 1eziA 228 44.41 c.68.1.13 34512 3bwwA 307 46.33 1szoA 257 46.34 c.14.1.3 106164 1efvB 255 47.35 c.26.2.3 31634 2ar9A 278 48.19 1w9yA 319 50.63 b.82.2.1 120801 1zx1A 231 51.56 c.23.5.3 125760 1j0hA 588 53.61 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1tikA 213 56.95 c.23.5.3 107003 1v84A 253 57.61 c.68.1.7 108419 1u3dA 509 57.79 a.99.1.1,c.28.1.1 107638,107639 1qbgA 272 59.33 c.23.5.3 31227 2oatA 439 59.87 c.67.1.4 34452 2ggtA 164 60.16 c.47.1.10 135156 1nfkA 325 61.63 b.1.18.1,b.2.5.3 21929,22444 1go3E 187 62.38 b.40.4.5,d.230.1.1 83054,83055 1rv3A 483 62.89 c.67.1.4 105101 2reb 352 63.07 2a84A 300 63.74 c.26.1.4 126389 1cewI 108 64.46 d.17.1.2 37999 1xe7A 203 64.79 b.82.1.16 115213 2gk4A 232 65.24 2eh6A 375 66.44 2ch9A 131 66.51 1xvqA 175 66.60 c.47.1.10 116094 1ltqA 301 67.80 c.108.1.9,c.37.1.1 78208,78209 1l5xA 280 67.94 c.106.1.1 77718 1d4aA 273 68.20 c.23.5.3 31219 1clxA 347 68.77 c.1.8.3 28899 2gk3A 256 69.67 1kwgA 645 70.33 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2j58A 359 70.60 1q98A 165 72.28 c.47.1.10 96253 1qmvA 197 72.76 c.47.1.10 33066 2z98A 200 74.74 1ceo 343 75.05 2pn8A 211 75.45 2g9zA 348 75.72 1gg4A 452 76.84 c.59.1.1,c.98.1.1,c.72.2.1 33957,58985,58986 2d1sA 548 77.69 2eo5A 419 78.50 1l1zA 274 80.45 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1l3lA 234 80.78 a.4.6.2,d.110.5.1 73541,73542 3c9qA 205 80.79 1sg0A 230 84.01 c.23.5.3 118955 1vjzA 341 85.13 c.1.8.3 100838 2j4hA 193 85.60 1amuA 563 85.92 e.23.1.1 43351 3cetA 334 87.78