# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hi9A	274	6.107	c.99.1.1	61063
1tw3A	360	26.92	a.4.5.29,c.66.1.12	107373,107374
1vcbA	118	30.41	d.15.1.1	37603
2a8kA	108	30.95	d.243.1.2	126404
2avuE	192	31.05		
1fusA	106	32.16	d.1.1.4	36050
2bbsA	290	34.02		
1ty9A	222	36.34	b.45.1.1	112827
1m2oA	768	38.12	a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1	78480,78481,78482,78483,78484
2yxyA	115	41.47		
1bccD	241	42.17	a.3.1.3,f.23.11.1	15959,43698
2dtrA	226	42.98	a.4.5.24,a.76.1.1,b.34.1.2	16193,18399,24450
1w63Q	158	48.28	i.23.1.1	109208
2vglS	142	53.37		
1uhvA	500	55.61	b.71.1.2,c.1.8.3	99402,99403
2q22A	139	56.92		
2fhzB	108	60.64	d.243.1.2	133506
1banA	110	62.49	d.1.1.2	36197
1q3iA	214	64.50	d.220.1.1	104524
1btl	263	69.38		
1lddA	74	71.65	a.4.5.34	73841
1lm8B	118	72.72	d.15.1.1	74033
1brhA	110	72.92	d.1.1.2	36151
1o08A	221	72.97	c.108.1.6	86525
1zvdA	380	73.03		
1gw5S	142	73.23	d.110.4.2	70633
1e0zA	128	74.97	d.15.4.1	59153
2v1nA	111	76.98		
2c4bA	143	78.15	d.1.1.2,g.3.2.1	129801,129802
1v2dA	381	78.49	c.67.1.1	108281
1b2zA	110	81.22	d.1.1.2	36216
1qlmA	316	83.18	d.147.1.1	41765
1r0wA	286	88.64	c.37.1.12	96754
1b1bA	140	88.99	a.4.5.24,a.76.1.1	16215,18421
2d28C	149	89.86		
1qz5A	375	89.87	c.55.1.1,c.55.1.1	96614,96615
1on2A	142	89.87	a.4.5.24,a.76.1.1	87103,87104