# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rmwA	212	10.68		
2b82A	211	14.44	c.108.1.12	128057
1ju3A	583	16.63	b.18.1.13,c.69.1.21	67300,67301
1smpI	101	28.18	b.61.2.1	27417
2cstA	411	39.13	c.67.1.1	34273
1nhpA	447	42.57	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
2gqcA	70	46.38		
2fuvA	549	55.52		
2ps5A	374	57.37		
1nuyA	337	58.41	e.7.1.1	86213
1xd5A	112	60.20	b.78.1.1	115155
1jiwI	106	61.05	b.61.2.1	63078
1t62A	166	64.60	b.122.1.4	106541
2uubT	106	75.05	a.7.6.1	139951
2idqA	105	76.62		
2ay1A	394	78.59	c.67.1.1	34357
1xmxA	385	82.75	c.52.1.26	115568
1fjgT	106	84.10	a.7.6.1	16338
1z5yE	149	87.79	c.47.1.10	124498