# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2b82A	211	11.66	c.108.1.12	128057
1rmwA	212	15.99		
1xd5A	112	19.92	b.78.1.1	115155
1smpI	101	20.62	b.61.2.1	27417
1ju3A	583	21.20	b.18.1.13,c.69.1.21	67300,67301
1xadA	345	24.80	c.77.1.1	35055
1ekgA	127	25.61	d.82.2.1	40021
2cstA	411	27.89	c.67.1.1	34273
2idqA	105	30.19		
1cnzA	363	31.15	c.77.1.1	35061
1sfdA	105	40.87	b.6.1.1	105480
1xwsA	313	43.05	d.144.1.7	116133
1iow	306	44.00		
2ivwA	113	47.83		
2bikB	313	50.33		
2ijzA	428	51.21		
1pv5A	264	52.38	d.251.1.1	95150
2fuvA	549	54.21		
1x0lA	333	54.26		
2uubT	106	55.68	a.7.6.1	139951
1b2pA	119	58.22	b.78.1.1	27998
1vqoQ	96	62.08	b.34.5.1	120378
1k6dA	220	63.98	c.124.1.2	72082
1ro5A	201	64.62	d.108.1.3	105023
1j5wA	298	65.84	d.104.1.1	71589
2ra6A	166	71.73		
1tyoA	435	73.05		
1rhsA	296	73.10	c.46.1.2,c.46.1.2	32703,32704
1ogdA	131	73.37	c.133.1.1	92893
1z5yE	149	73.91	c.47.1.10	124498
2dkhA	639	74.64		
1nhpA	447	75.70	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1r5lA	262	75.80	a.5.3.1,c.13.1.1	97099,97100
2yvqA	143	78.97		
1fjgT	106	84.48	a.7.6.1	16338
2acaA	189	88.50	d.63.1.2	126545