# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1rmwA	212	10.62		
2b82A	211	15.82	c.108.1.12	128057
1smpI	101	21.54	b.61.2.1	27417
1ju3A	583	22.60	b.18.1.13,c.69.1.21	67300,67301
2v36A	376	34.85		
2cstA	411	38.99	c.67.1.1	34273
2ps5A	374	46.84		
1iow	306	49.30		
1nhpA	447	50.27	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1xmxA	385	55.27	c.52.1.26	115568
1nuyA	337	55.68	e.7.1.1	86213
1svmA	377	58.46	c.37.1.20	112126
2idqA	105	60.19		
2fuvA	549	65.77		
2gqcA	70	65.78		
1xd5A	112	66.37	b.78.1.1	115155
1a0rG	65	67.15	a.137.3.1	19639
2ay1A	394	70.41	c.67.1.1	34357
2uubT	106	74.20	a.7.6.1	139951
2ev0A	142	74.88	a.4.5.24,a.76.1.1	132413,132414
1ekgA	127	77.18	d.82.2.1	40021
1t62A	166	77.61	b.122.1.4	106541
1jiwI	106	79.28	b.61.2.1	63078
2acaA	189	84.14	d.63.1.2	126545
1sfdA	105	84.93	b.6.1.1	105480
2nqoA	376	89.64	d.153.1.6	138473