# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cstA	411	10.80	c.67.1.1	34273
2ay1A	394	20.58	c.67.1.1	34357
1rmwA	212	21.46		
1smpI	101	24.55	b.61.2.1	27417
1nhpA	447	28.28	c.3.1.5,c.3.1.5,d.87.1.1	30549,30550,40196
1ju3A	583	29.91	b.18.1.13,c.69.1.21	67300,67301
2uubT	106	33.29	a.7.6.1	139951
2b82A	211	33.61	c.108.1.12	128057
1svmA	377	35.67	c.37.1.20	112126
2btlA	134	45.02	b.148.1.1	129154
2idqA	105	46.76		
2giaA	195	47.62	d.18.1.4	135221
1iow	306	50.05		
1fjgT	106	52.28	a.7.6.1	16338
2acaA	189	54.09	d.63.1.2	126545
1xd5A	112	56.00	b.78.1.1	115155
1jiwI	106	56.64	b.61.2.1	63078
1xfkA	336	56.99	c.42.1.1	115264
1sfdA	105	61.24	b.6.1.1	105480
2v36A	376	64.48		
1b2pA	119	64.60	b.78.1.1	27998
2ev0A	142	69.12	a.4.5.24,a.76.1.1	132413,132414
1nuyA	337	76.66	e.7.1.1	86213
2ivwA	113	78.13		
2fuvA	549	84.03		
1ars	396	87.90