# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2cstA	411	4.396	c.67.1.1	34273
2ay1A	394	5.272	c.67.1.1	34357
1ars	396	13.82		
1ajsA	412	23.87	c.67.1.1	34276
2bikB	313	31.67		
1rmwA	212	38.65		
1t62A	166	41.57	b.122.1.4	106541
2gp6A	434	45.07		
7aatA	401	52.50	c.67.1.1	34250
1n7hA	381	63.74	c.2.1.2	80250
1gtmA	419	65.40	c.2.1.7,c.58.1.1	30223,33871
2a2jA	246	66.37	b.45.1.1	126033
1fyeA	229	67.92	c.23.16.4	31477
2uubT	106	74.98	a.7.6.1	139951
1xwsA	313	75.94	d.144.1.7	116133
1xmxA	385	78.00	c.52.1.26	115568
1fjgT	106	83.02	a.7.6.1	16338
2bbdA	350	85.64		
1smpI	101	86.86	b.61.2.1	27417